Best TWAS P=1.21e-09 · Best GWAS P=2.78e-08 conditioned to 0.212
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Cells Transformed fibroblasts | DHDDS | 0.13 | 0.09 | lasso | 4 | 0.08 | 1.0e-06 | 5.5 | -5.5 | 2.9e-08 | -0.99 | 0.01 | 0.99 | FALSE |
2 | GTEx | Esophagus Mucosa | DHDDS | 0.11 | 0.06 | lasso | 4 | 0.04 | 6.6e-04 | -4.5 | -5.5 | 2.9e-08 | -0.60 | 0.08 | 0.87 | FALSE |
3 | GTEx | Nerve Tibial | PDIK1L | 0.09 | 0.01 | enet | 10 | 0.03 | 2.2e-03 | 5.2 | -5.3 | 1.3e-07 | -0.21 | 0.09 | 0.88 | FALSE |
4 | GTEx | Pituitary | CNKSR1 | 0.38 | 0.16 | lasso | 7 | 0.15 | 1.4e-04 | 4.7 | -5.4 | 7.9e-08 | -0.26 | 0.22 | 0.35 | FALSE |
5 | GTEx | Skin Not Sun Exposed Suprapubic | CNKSR1 | 0.15 | 0.10 | lasso | 7 | 0.09 | 1.0e-05 | 4.7 | -5.2 | 1.6e-07 | -0.27 | 0.34 | 0.63 | FALSE |
6 | GTEx | Skin Sun Exposed Lower leg | DHDDS | 0.21 | 0.14 | lasso | 1 | 0.12 | 5.5e-10 | 5.5 | -5.5 | 3.6e-08 | -1.00 | 0.01 | 0.99 | FALSE |
7 | GTEx | Skin Sun Exposed Lower leg | PDIK1L | 0.14 | 0.05 | enet | 23 | 0.12 | 3.1e-10 | 4.8 | -5.6 | 2.4e-08 | -0.17 | 0.24 | 0.76 | TRUE |
8 | METSIM | Adipose | RPS6KA1 | 0.04 | 0.01 | bslmm | 367 | 0.03 | 3.9e-05 | 4.5 | 5.2 | 1.8e-07 | 0.54 | 0.17 | 0.80 | FALSE |
9 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | TRIM63 | 0.03 | 0.02 | blup | 33 | 0.02 | 4.6e-03 | 4.8 | 5.5 | 4.5e-08 | 0.25 | 0.02 | 0.73 | FALSE |
10 | The Cancer Genome Atlas | Colon Adenocarcinoma | TRIM63 | 0.08 | 0.10 | lasso | 4 | 0.10 | 3.7e-06 | 4.9 | 5.2 | 1.9e-07 | 0.24 | 0.01 | 0.98 | FALSE |
11 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | PDIK1L | 0.02 | 0.00 | blup | 37 | 0.02 | 1.2e-03 | 2.3 | -5.2 | 1.7e-07 | -0.24 | 0.02 | 0.67 | FALSE |
12 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | RPS6KA1 | 0.11 | 0.05 | lasso | 6 | 0.07 | 8.0e-04 | -5.0 | 6.1 | 1.2e-09 | 0.59 | 0.03 | 0.54 | TRUE |
13 | The Cancer Genome Atlas | Prostate Adenocarcinoma | DHDDS | 0.04 | 0.00 | blup | 50 | 0.02 | 5.7e-03 | 5.5 | -5.7 | 1.2e-08 | -0.78 | 0.01 | 0.74 | FALSE |
14 | The Cancer Genome Atlas | Prostate Adenocarcinoma | PDIK1L | 0.03 | 0.03 | blup | 37 | 0.02 | 7.0e-03 | -4.0 | -5.3 | 1.0e-07 | -0.23 | 0.02 | 0.24 | FALSE |