Best TWAS P=4.25e-24 · Best GWAS P=6.26e-18 conditioned to 0.011
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | FCHO2 | 0.09 | 0.09 | lasso | 6 | 0.10 | 1.1e-08 | 5.1 | 5.5 | 2.8e-08 | -0.03 | 1.00 | 0.00 | FALSE |
2 | GTEx | Adipose Visceral Omentum | FCHO2 | 0.27 | 0.10 | lasso | 5 | 0.06 | 6.2e-04 | 6.7 | 6.2 | 4.3e-10 | -0.01 | 0.57 | 0.04 | FALSE |
3 | GTEx | Adrenal Gland | FCHO2 | 0.11 | 0.03 | lasso | 3 | 0.01 | 1.2e-01 | 6.7 | 6.5 | 9.2e-11 | -0.05 | 0.18 | 0.04 | FALSE |
4 | GTEx | Artery Aorta | FCHO2 | 0.07 | 0.04 | lasso | 2 | 0.03 | 5.2e-03 | 6.5 | 6.4 | 1.5e-10 | -0.06 | 0.25 | 0.04 | FALSE |
5 | GTEx | Artery Tibial | FCHO2 | 0.14 | 0.03 | enet | 59 | 0.02 | 5.9e-03 | 3.0 | 7.5 | 4.2e-14 | 0.01 | 0.44 | 0.04 | FALSE |
6 | GTEx | Cells EBV-transformed lymphocytes | FCHO2 | 0.28 | 0.15 | enet | 21 | 0.05 | 8.7e-03 | 6.7 | 5.4 | 5.3e-08 | -0.06 | 0.23 | 0.06 | FALSE |
7 | GTEx | Esophagus Gastroesophageal Junction | FCHO2 | 0.16 | -0.01 | enet | 24 | -0.01 | 7.5e-01 | 4.4 | 10.1 | 4.3e-24 | 0.45 | 0.05 | 0.40 | TRUE |
8 | GTEx | Esophagus Mucosa | FCHO2 | 0.15 | 0.07 | lasso | 2 | 0.09 | 1.1e-06 | 6.5 | -6.5 | 9.0e-11 | 0.06 | 0.98 | 0.00 | FALSE |
9 | GTEx | Lung | FCHO2 | 0.20 | 0.08 | enet | 61 | 0.07 | 5.6e-06 | -6.4 | 5.9 | 2.9e-09 | -0.04 | 0.61 | 0.01 | FALSE |
10 | GTEx | Nerve Tibial | FCHO2 | 0.10 | 0.08 | enet | 17 | 0.05 | 3.4e-04 | 6.7 | 7.4 | 1.6e-13 | -0.09 | 0.88 | 0.01 | FALSE |
11 | GTEx | Pancreas | FCHO2 | 0.11 | 0.04 | enet | 7 | 0.03 | 1.8e-02 | 2.7 | 5.2 | 1.7e-07 | -0.08 | 0.26 | 0.04 | FALSE |
12 | GTEx | Skin Sun Exposed Lower leg | FCHO2 | 0.06 | 0.03 | enet | 20 | 0.03 | 2.6e-03 | 6.7 | 6.8 | 9.4e-12 | -0.06 | 0.31 | 0.03 | FALSE |
13 | METSIM | Adipose | FCHO2 | 0.06 | 0.08 | lasso | 5 | 0.08 | 1.9e-11 | 6.5 | 6.7 | 2.8e-11 | -0.07 | 1.00 | 0.00 | FALSE |
14 | NTR | Blood | FCHO2 | 0.04 | 0.03 | lasso | 4 | 0.03 | 2.4e-11 | 6.5 | 6.2 | 4.3e-10 | -0.08 | 1.00 | 0.00 | FALSE |
15 | YFS | Blood | FCHO2 | 0.23 | 0.24 | lasso | 6 | 0.29 | 2.8e-97 | 6.5 | 6.3 | 2.9e-10 | -0.08 | 1.00 | 0.00 | FALSE |
16 | The Cancer Genome Atlas | Breast Invasive Carcinoma | BTF3 | 0.02 | 0.02 | lasso | 3 | 0.02 | 2.5e-04 | 5.4 | 5.4 | 7.7e-08 | 0.32 | 0.00 | 0.97 | TRUE |
17 | The Cancer Genome Atlas | Breast Invasive Carcinoma | FCHO2 | 0.05 | 0.04 | blup | 84 | 0.04 | 1.9e-09 | 6.6 | 6.0 | 2.5e-09 | -0.01 | 0.00 | 1.00 | FALSE |
18 | The Cancer Genome Atlas | Colon Adenocarcinoma | FCHO2 | 0.10 | 0.08 | blup | 84 | 0.08 | 3.6e-05 | 6.6 | 6.4 | 1.9e-10 | -0.06 | 0.00 | 0.99 | FALSE |
19 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | ZNF366 | 0.03 | 0.01 | blup | 70 | 0.01 | 9.6e-03 | 5.6 | -5.6 | 2.3e-08 | -0.05 | 0.04 | 0.22 | TRUE |
20 | The Cancer Genome Atlas | Brain Lower Grade Glioma | FCHO2 | 0.05 | 0.04 | lasso | 4 | 0.03 | 9.8e-05 | 6.6 | 6.6 | 4.2e-11 | -0.05 | 0.01 | 0.99 | FALSE |
21 | The Cancer Genome Atlas | Rectum Adenocarcinoma | FCHO2 | 0.32 | 0.16 | blup | 84 | 0.21 | 1.0e-05 | 4.3 | 5.9 | 2.8e-09 | -0.05 | 0.06 | 0.89 | FALSE |
22 | The Cancer Genome Atlas | Soft Tissue Sarcoma | FCHO2 | 0.06 | 0.04 | blup | 84 | 0.05 | 8.9e-04 | 4.3 | 5.9 | 3.6e-09 | -0.04 | 0.05 | 0.89 | FALSE |
23 | The Cancer Genome Atlas | Thyroid Carcinoma | FCHO2 | 0.05 | 0.03 | blup | 84 | 0.01 | 1.2e-02 | 5.1 | 6.0 | 2.0e-09 | -0.05 | 0.02 | 0.82 | FALSE |