Best TWAS P=2.27e-08 · Best GWAS P=1.59e-13 conditioned to 1.96e-08
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ATL1 | 0.07 | 0.03 | enet | 9 | 0.04 | 4.8e-05 | 4.5 | -5.6 | 2.3e-08 | -0.40 | 0.11 | 0.14 | TRUE |
| 2 | The Cancer Genome Atlas | Brain Lower Grade Glioma | SAV1 | 0.07 | 0.02 | enet | 8 | 0.04 | 2.3e-05 | 6.8 | -5.2 | 2.4e-07 | -0.72 | 0.02 | 0.97 | FALSE |