Best TWAS P=1.65e-170 · Best GWAS P=1.31e-158 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | BMP4 | 0.09 | 0.09 | enet | 6 | 0.09 | 8.5e-11 | -26.8 | -24.5 | 1.2e-132 | 0.95 | 0.00 | 1.00 | TRUE |
2 | GTEx | Brain Cerebellum | BMP4 | 0.34 | 0.13 | enet | 21 | 0.16 | 1.7e-05 | -26.8 | -27.8 | 1.7e-170 | 0.77 | 0.00 | 0.99 | TRUE |
3 | GTEx | Whole Blood | ERO1L | 0.12 | 0.01 | lasso | 3 | 0.00 | 3.1e-01 | -6.2 | 6.1 | 8.0e-10 | -0.06 | 0.03 | 0.96 | FALSE |
4 | GTEx | Whole Blood | RP11-841O20.2 | 0.17 | 0.03 | enet | 33 | 0.05 | 1.4e-05 | -6.2 | 5.2 | 2.0e-07 | -0.04 | 0.02 | 0.98 | FALSE |
5 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | ERO1L | 0.03 | 0.01 | blup | 57 | 0.02 | 1.5e-02 | 2.8 | -6.2 | 6.6e-10 | 0.06 | 0.02 | 0.68 | FALSE |
6 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ERO1L | 0.01 | 0.01 | blup | 57 | 0.01 | 1.7e-02 | -6.2 | -6.8 | 1.2e-11 | 0.05 | 0.01 | 0.87 | TRUE |
7 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ERO1L | 0.08 | 0.01 | blup | 57 | 0.03 | 3.8e-04 | -6.5 | -5.7 | 1.2e-08 | 0.06 | 0.01 | 0.96 | FALSE |
8 | The Cancer Genome Atlas | Prostate Adenocarcinoma | ERO1L | 0.02 | 0.03 | lasso | 4 | 0.03 | 6.2e-04 | -6.3 | -6.3 | 2.3e-10 | 0.06 | 0.01 | 0.95 | FALSE |
9 | The Cancer Genome Atlas | Prostate Adenocarcinoma | STYX | 0.06 | 0.00 | blup | 50 | 0.03 | 5.4e-04 | 1.6 | 5.2 | 2.3e-07 | -0.04 | 0.02 | 0.66 | FALSE |
10 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | ERO1L | 0.13 | 0.03 | enet | 13 | 0.06 | 3.3e-03 | -6.4 | -5.7 | 1.2e-08 | 0.04 | 0.01 | 0.92 | FALSE |
11 | The Cancer Genome Atlas | Thyroid Carcinoma | CDKN3 | 0.03 | 0.03 | enet | 6 | 0.02 | 7.2e-03 | -6.4 | -6.0 | 1.5e-09 | 0.03 | 0.02 | 0.90 | TRUE |
12 | The Cancer Genome Atlas | Thyroid Carcinoma | ERO1L | 0.13 | 0.14 | blup | 57 | 0.14 | 1.1e-13 | -6.3 | -5.9 | 4.7e-09 | 0.09 | 0.01 | 0.99 | FALSE |