Best TWAS P=4.98e-18 · Best GWAS P=5.29e-18 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | EEF2K | 0.14 | 0.23 | lasso | 7 | 0.23 | 2.2e-27 | 5.2 | -5.3 | 1.2e-07 | 0.01 | 1.00 | 0.00 | TRUE |
2 | GTEx | Adrenal Gland | USP31 | 0.11 | 0.04 | lasso | 2 | 0.01 | 1.7e-01 | -8.4 | 8.5 | 2.2e-17 | -0.80 | 0.04 | 0.78 | FALSE |
3 | GTEx | Artery Aorta | RRN3P1 | 0.22 | 0.08 | lasso | 3 | 0.10 | 2.3e-06 | 6.4 | -5.9 | 4.7e-09 | 0.00 | 0.26 | 0.68 | FALSE |
4 | GTEx | Artery Tibial | NPIPB4 | 0.12 | 0.03 | lasso | 4 | 0.01 | 2.2e-02 | 6.4 | 6.6 | 3.8e-11 | -0.01 | 0.04 | 0.12 | TRUE |
5 | GTEx | Artery Tibial | RRN3P1 | 0.16 | 0.11 | lasso | 7 | 0.13 | 1.4e-10 | 6.4 | -5.9 | 3.6e-09 | 0.00 | 0.23 | 0.77 | TRUE |
6 | GTEx | Colon Transverse | RP11-645C24.5 | 0.41 | 0.12 | enet | 23 | 0.24 | 5.5e-12 | 2.1 | -5.9 | 3.8e-09 | -0.02 | 0.42 | 0.08 | TRUE |
7 | GTEx | Esophagus Muscularis | UQCRC2 | 0.11 | 0.03 | lasso | 4 | 0.01 | 7.6e-02 | 6.4 | -5.9 | 3.8e-09 | 0.02 | 0.08 | 0.16 | FALSE |
8 | GTEx | Esophagus Muscularis | RRN3P1 | 0.28 | 0.08 | enet | 22 | 0.07 | 7.0e-05 | 4.3 | -5.4 | 5.6e-08 | -0.01 | 0.25 | 0.57 | FALSE |
9 | GTEx | Esophagus Muscularis | RP11-645C24.5 | 0.51 | 0.23 | enet | 15 | 0.34 | 1.8e-21 | 2.1 | -5.1 | 3.0e-07 | -0.01 | 1.00 | 0.00 | TRUE |
10 | GTEx | Lung | EARS2 | 0.10 | 0.05 | enet | 22 | 0.06 | 3.6e-05 | -3.0 | 5.6 | 1.9e-08 | -0.39 | 0.80 | 0.04 | FALSE |
11 | GTEx | Muscle Skeletal | USP31 | 0.08 | 0.03 | lasso | 5 | 0.02 | 6.6e-03 | -8.3 | 8.3 | 6.8e-17 | -0.83 | 0.08 | 0.90 | FALSE |
12 | GTEx | Muscle Skeletal | NPIPB4 | 0.14 | 0.01 | lasso | 8 | 0.02 | 1.7e-03 | 3.6 | 6.5 | 6.3e-11 | -0.01 | 0.10 | 0.14 | TRUE |
13 | GTEx | Nerve Tibial | USP31 | 0.12 | 0.01 | enet | 28 | 0.01 | 3.4e-02 | -8.3 | 5.5 | 4.3e-08 | -0.49 | 0.08 | 0.73 | FALSE |
14 | GTEx | Ovary | RP11-105C19.1 | 0.29 | 0.05 | lasso | 4 | 0.04 | 4.1e-02 | -5.2 | 5.4 | 5.4e-08 | -0.41 | 0.04 | 0.45 | FALSE |
15 | GTEx | Pituitary | RRN3P1 | 0.30 | 0.07 | lasso | 6 | 0.10 | 1.4e-03 | 3.0 | -5.2 | 1.6e-07 | 0.02 | 0.07 | 0.10 | FALSE |
16 | GTEx | Skin Not Sun Exposed Suprapubic | RP11-645C24.5 | 0.14 | 0.05 | enet | 13 | 0.10 | 3.2e-06 | 6.4 | -5.2 | 2.3e-07 | -0.04 | 0.20 | 0.56 | FALSE |
17 | GTEx | Skin Sun Exposed Lower leg | RRN3P1 | 0.07 | 0.07 | lasso | 3 | 0.07 | 3.9e-06 | 6.4 | -6.4 | 1.3e-10 | 0.02 | 0.19 | 0.62 | FALSE |
18 | GTEx | Skin Sun Exposed Lower leg | RP11-645C24.5 | 0.30 | 0.06 | lasso | 10 | 0.21 | 2.2e-17 | 6.4 | -5.5 | 3.9e-08 | 0.01 | 0.25 | 0.75 | FALSE |
19 | GTEx | Testis | USP31 | 0.29 | 0.29 | lasso | 10 | 0.28 | 4.3e-13 | -8.3 | 8.3 | 1.4e-16 | -0.80 | 0.08 | 0.92 | FALSE |
20 | GTEx | Testis | RP11-20G6.3 | 0.17 | 0.15 | enet | 9 | 0.15 | 2.7e-07 | -7.9 | 8.7 | 5.0e-18 | -0.84 | 0.04 | 0.95 | TRUE |
21 | METSIM | Adipose | COG7 | 0.05 | 0.00 | blup | 479 | 0.04 | 2.0e-06 | -8.1 | 5.5 | 3.9e-08 | -0.41 | 0.14 | 0.64 | FALSE |
22 | METSIM | Adipose | CTD-2270L9.4 | 0.03 | 0.01 | blup | 433 | 0.02 | 1.8e-03 | -3.2 | -5.7 | 1.4e-08 | 0.37 | 0.72 | 0.03 | FALSE |
23 | ROSMAP | Brain Pre-frontal Cortex | EEF2K | 0.09 | 0.10 | bslmm | 171 | 0.09 | 1.5e-11 | 5.2 | -5.2 | 1.5e-07 | 0.03 | 0.99 | 0.01 | TRUE |
24 | The Cancer Genome Atlas | Brain Lower Grade Glioma | USP31 | 0.02 | 0.01 | blup | 81 | 0.01 | 9.0e-03 | -8.0 | 6.3 | 3.9e-10 | -0.54 | 0.04 | 0.39 | FALSE |