Best TWAS P=2.01e-71 · Best GWAS P=8.21e-162 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Visceral Omentum | ZNF519 | 0.29 | 0.21 | lasso | 9 | 0.23 | 3.5e-12 | -4.9 | -7.6 | 3.5e-14 | 0.25 | 1.00 | 0.00 | TRUE |
2 | GTEx | Brain Cerebellar Hemisphere | ZNF519 | 0.30 | 0.06 | lasso | 4 | 0.05 | 2.5e-02 | -3.8 | -10.7 | 1.1e-26 | 0.34 | 0.07 | 0.08 | FALSE |
3 | GTEx | Breast Mammary Tissue (Female) | ZNF519 | 0.54 | 0.18 | lasso | 10 | 0.24 | 9.2e-08 | -2.9 | -10.1 | 6.3e-24 | 0.42 | 0.33 | 0.52 | TRUE |
4 | GTEx | Cells Transformed fibroblasts | FAM210A | 0.21 | 0.00 | enet | 34 | 0.09 | 4.3e-07 | 2.1 | 6.2 | 4.6e-10 | -0.18 | 0.25 | 0.03 | FALSE |
5 | GTEx | Colon Sigmoid | LDLRAD4 | 0.26 | 0.00 | lasso | 7 | 0.02 | 8.6e-02 | 4.8 | 5.3 | 1.3e-07 | -0.05 | 0.16 | 0.06 | TRUE |
6 | GTEx | Lung | RP11-411B10.3 | 0.15 | 0.07 | enet | 16 | 0.10 | 2.7e-08 | -4.9 | -6.5 | 6.3e-11 | 0.25 | 0.99 | 0.00 | FALSE |
7 | GTEx | Nerve Tibial | FAM210A | 0.25 | 0.02 | enet | 35 | 0.08 | 2.6e-06 | 11.3 | 12.1 | 7.3e-34 | -0.45 | 0.04 | 0.76 | FALSE |
8 | GTEx | Pituitary | ZNF519 | 0.39 | 0.27 | lasso | 4 | 0.18 | 3.1e-05 | -3.5 | -6.5 | 9.7e-11 | 0.30 | 0.24 | 0.30 | TRUE |
9 | GTEx | Skin Not Sun Exposed Suprapubic | RP11-411B10.3 | 0.08 | 0.03 | enet | 10 | 0.05 | 1.6e-03 | -2.2 | -6.6 | 3.2e-11 | 0.16 | 0.11 | 0.05 | FALSE |
10 | METSIM | Adipose | RNMT | 0.06 | 0.04 | lasso | 7 | 0.05 | 6.6e-08 | 6.1 | 5.9 | 3.7e-09 | -0.25 | 0.98 | 0.01 | TRUE |
11 | NTR | Blood | RNMT | 0.03 | 0.02 | lasso | 5 | 0.02 | 4.7e-06 | 6.1 | 6.4 | 2.0e-10 | -0.26 | 0.99 | 0.00 | FALSE |
12 | YFS | Blood | RNMT | 0.11 | 0.12 | lasso | 6 | 0.12 | 8.0e-38 | 6.1 | 6.7 | 2.4e-11 | -0.27 | 1.00 | 0.00 | FALSE |
13 | The Cancer Genome Atlas | Brain Lower Grade Glioma | RNMT | 0.03 | 0.00 | enet | 8 | 0.02 | 2.0e-03 | 6.0 | 17.9 | 2.0e-71 | -0.48 | 0.02 | 0.37 | TRUE |
14 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | C18orf19 | 0.07 | 0.01 | blup | 57 | 0.03 | 2.3e-03 | 13.8 | 13.8 | 1.4e-43 | -0.29 | 0.04 | 0.09 | TRUE |
15 | The Cancer Genome Atlas | Prostate Adenocarcinoma | C18orf19 | 0.17 | 0.05 | enet | 10 | 0.05 | 7.4e-06 | 3.6 | 10.4 | 4.1e-25 | -0.42 | 0.38 | 0.31 | TRUE |