Best TWAS P=3.27e-32 · Best GWAS P=2.53e-32 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | ITGA4 | 0.07 | 0.01 | enet | 15 | 0.04 | 3.1e-05 | 11.41 | -7.6 | 3.0e-14 | -0.63 | 0.09 | 0.76 | FALSE |
2 | GTEx | Artery Aorta | UBE2E3 | 0.09 | 0.00 | lasso | 3 | 0.01 | 1.6e-01 | 11.08 | 10.6 | 2.8e-26 | 0.79 | 0.04 | 0.68 | FALSE |
3 | GTEx | Artery Tibial | FRZB | 0.14 | 0.04 | enet | 16 | 0.05 | 9.6e-05 | -1.04 | -5.1 | 2.9e-07 | 0.12 | 0.83 | 0.11 | FALSE |
4 | GTEx | Artery Tibial | DUSP19 | 0.15 | 0.07 | lasso | 5 | 0.06 | 1.9e-05 | 4.00 | 5.3 | 1.2e-07 | -0.12 | 0.93 | 0.00 | TRUE |
5 | GTEx | Brain Cerebellum | UBE2E3 | 0.26 | 0.13 | enet | 11 | 0.21 | 9.4e-07 | 5.84 | 6.1 | 1.2e-09 | 0.48 | 0.26 | 0.30 | FALSE |
6 | GTEx | Brain Cerebellum | RP11-438L19.1 | 0.28 | 0.01 | lasso | 7 | 0.02 | 9.8e-02 | 4.69 | -5.8 | 9.0e-09 | 0.09 | 0.09 | 0.05 | TRUE |
7 | GTEx | Brain Hippocampus | FTH1P20 | 0.18 | 0.02 | lasso | 6 | 0.00 | 4.3e-01 | 11.43 | -11.0 | 4.8e-28 | -0.88 | 0.04 | 0.55 | FALSE |
8 | GTEx | Breast Mammary Tissue | FRZB | 0.13 | 0.05 | lasso | 3 | 0.02 | 3.7e-02 | -6.26 | -7.7 | 1.6e-14 | 0.06 | 0.03 | 0.76 | FALSE |
9 | GTEx | Esophagus Mucosa | FRZB | 0.08 | 0.00 | enet | 12 | 0.02 | 2.1e-02 | -3.55 | -6.4 | 1.5e-10 | 0.10 | 0.01 | 0.93 | TRUE |
10 | GTEx | Esophagus Mucosa | UBE2E3 | 0.07 | 0.02 | enet | 22 | 0.06 | 7.9e-05 | -5.09 | 7.7 | 1.2e-14 | 0.62 | 0.14 | 0.76 | FALSE |
11 | GTEx | Esophagus Muscularis | UBE2E3 | 0.10 | 0.09 | lasso | 3 | 0.08 | 2.2e-05 | 11.68 | 11.8 | 3.3e-32 | 0.97 | 0.01 | 0.98 | TRUE |
12 | GTEx | Nerve Tibial | FRZB | 0.26 | 0.26 | lasso | 4 | 0.26 | 2.1e-18 | -9.58 | -9.6 | 1.0e-21 | 0.05 | 0.00 | 1.00 | TRUE |
13 | GTEx | Nerve Tibial | UBE2E3 | 0.09 | 0.03 | lasso | 3 | 0.03 | 6.4e-03 | 11.08 | 11.6 | 7.2e-31 | 0.89 | 0.03 | 0.94 | FALSE |
14 | GTEx | Ovary | UBE2E3 | 0.25 | 0.09 | lasso | 8 | 0.10 | 1.5e-03 | -6.90 | 7.9 | 3.7e-15 | 0.55 | 0.11 | 0.35 | FALSE |
15 | GTEx | Skin Not Sun Exposed Suprapubic | UBE2E3 | 0.25 | 0.06 | enet | 39 | 0.12 | 2.5e-07 | 10.28 | 8.8 | 2.0e-18 | 0.72 | 0.02 | 0.98 | FALSE |
16 | GTEx | Testis | NUP35 | 0.34 | 0.32 | lasso | 5 | 0.29 | 3.1e-13 | 5.64 | -5.7 | 1.1e-08 | 0.04 | 1.00 | 0.00 | FALSE |
17 | METSIM | Adipose | NUP35 | 0.06 | 0.00 | bslmm | 385 | 0.02 | 1.5e-04 | -0.16 | -5.7 | 1.5e-08 | 0.02 | 0.07 | 0.22 | FALSE |
18 | NTR | Blood | UBE2E3 | 0.02 | 0.00 | bslmm | 446 | 0.00 | 1.1e-02 | 11.74 | 8.8 | 1.1e-18 | 0.79 | 0.01 | 0.94 | FALSE |
19 | ROSMAP | Brain Pre-frontal Cortex | NCKAP1 | 0.08 | 0.02 | bslmm | 441 | 0.02 | 3.5e-04 | 3.87 | -6.1 | 1.2e-09 | 0.06 | 0.79 | 0.02 | FALSE |
20 | The Cancer Genome Atlas | Breast Invasive Carcinoma | FRZB | 0.06 | 0.03 | lasso | 5 | 0.05 | 2.8e-11 | -9.58 | -7.8 | 6.2e-15 | 0.07 | 0.00 | 1.00 | TRUE |
21 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | FRZB | 0.05 | 0.01 | blup | 64 | 0.03 | 6.9e-04 | -1.28 | -7.7 | 1.2e-14 | 0.11 | 0.07 | 0.14 | FALSE |
22 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | UBE2E3 | 0.02 | 0.00 | blup | 61 | 0.01 | 1.1e-02 | -6.19 | 10.9 | 8.8e-28 | 0.88 | 0.01 | 0.80 | FALSE |
23 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | UBE2E3 | 0.04 | 0.02 | blup | 61 | 0.02 | 1.4e-03 | 11.08 | 11.2 | 6.6e-29 | 0.86 | 0.01 | 0.88 | FALSE |
24 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | NCKAP1 | 0.07 | 0.09 | lasso | 3 | 0.07 | 3.4e-04 | 6.75 | 6.8 | 7.3e-12 | -0.05 | 0.11 | 0.06 | FALSE |
25 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | FRZB | 0.08 | 0.01 | blup | 64 | 0.05 | 8.1e-07 | -9.58 | -8.2 | 2.6e-16 | 0.11 | 0.00 | 0.96 | TRUE |
26 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | FRZB | 0.23 | 0.08 | enet | 19 | 0.10 | 8.1e-05 | -8.70 | -6.0 | 2.0e-09 | 0.06 | 0.00 | 0.93 | TRUE |
27 | The Cancer Genome Atlas | Prostate Adenocarcinoma | FRZB | 0.13 | 0.01 | lasso | 5 | 0.05 | 1.3e-05 | -1.28 | -6.6 | 3.9e-11 | 0.08 | 0.02 | 0.96 | FALSE |
28 | The Cancer Genome Atlas | Prostate Adenocarcinoma | UBE2E3 | 0.05 | 0.03 | blup | 61 | 0.03 | 4.0e-04 | 11.08 | 11.3 | 9.9e-30 | 0.91 | 0.02 | 0.96 | FALSE |
29 | The Cancer Genome Atlas | Stomach Adenocarcinoma | FRZB | 0.10 | 0.00 | blup | 64 | 0.03 | 1.6e-03 | -8.82 | -8.9 | 4.0e-19 | 0.15 | 0.04 | 0.28 | FALSE |