Best TWAS P=2.06e-09 · Best GWAS P=1.17e-09 conditioned to 0.126
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | LOC100506123 | 0.10 | 0.11 | lasso | 5 | 0.10 | 1.1e-12 | 5.0 | 5.2 | 2.0e-07 | 0.74 | 0.23 | 0.76 | FALSE |
2 | GTEx | Adipose Visceral Omentum | ANKRD36B | 0.21 | 0.18 | lasso | 6 | 0.18 | 1.9e-09 | 5.0 | 5.2 | 1.6e-07 | 0.77 | 0.27 | 0.73 | FALSE |
3 | GTEx | Breast Mammary Tissue (Female) | ANKRD36B | 0.13 | 0.10 | lasso | 3 | 0.14 | 7.7e-05 | 5.0 | 6.0 | 2.1e-09 | 0.91 | 0.00 | 0.96 | TRUE |
4 | GTEx | Colon Sigmoid | ANKRD36B | 0.35 | 0.18 | lasso | 3 | 0.21 | 5.7e-08 | 6.1 | 5.5 | 3.6e-08 | 0.95 | 0.00 | 1.00 | FALSE |
5 | GTEx | Colon Transverse | AC017099.3 | 0.13 | 0.05 | enet | 6 | 0.06 | 7.6e-04 | 5.0 | 5.2 | 1.8e-07 | 0.78 | 0.12 | 0.76 | FALSE |
6 | GTEx | Esophagus Mucosa | ANKRD36B | 0.33 | 0.25 | enet | 21 | 0.25 | 7.9e-17 | 5.0 | 5.2 | 2.3e-07 | 0.77 | 0.27 | 0.72 | FALSE |
7 | GTEx | Muscle Skeletal | AC017099.3 | 0.15 | 0.07 | lasso | 9 | 0.10 | 1.3e-09 | 5.0 | 5.2 | 2.5e-07 | 0.79 | 0.11 | 0.89 | FALSE |
8 | GTEx | Muscle Skeletal | AC159540.1 | 0.04 | 0.01 | lasso | 6 | 0.01 | 2.3e-02 | 4.0 | 5.2 | 2.4e-07 | 0.75 | 0.04 | 0.89 | FALSE |
9 | GTEx | Nerve Tibial | COX5B | 0.08 | 0.05 | lasso | 4 | 0.06 | 6.3e-05 | 5.1 | 5.3 | 1.1e-07 | 0.72 | 0.16 | 0.75 | FALSE |
10 | GTEx | Pancreas | AC017099.3 | 0.17 | 0.19 | lasso | 5 | 0.16 | 2.7e-07 | 4.8 | 5.3 | 1.4e-07 | 0.80 | 0.02 | 0.98 | FALSE |
11 | GTEx | Skin Not Sun Exposed Suprapubic | ANKRD36B | 0.29 | 0.34 | lasso | 5 | 0.33 | 1.7e-18 | 5.0 | 5.2 | 1.5e-07 | 0.79 | 0.26 | 0.73 | FALSE |
12 | GTEx | Small Intestine Terminal Ileum | TMEM131 | 0.29 | -0.01 | enet | 28 | 0.08 | 9.1e-03 | -3.0 | -5.8 | 6.8e-09 | -0.53 | 0.03 | 0.37 | FALSE |
13 | GTEx | Small Intestine Terminal Ileum | ANKRD36 | 0.22 | 0.03 | enet | 15 | 0.11 | 1.8e-03 | 3.4 | -5.4 | 5.9e-08 | -0.58 | 0.03 | 0.42 | FALSE |
14 | GTEx | Thyroid | ANKRD36 | 0.11 | 0.08 | lasso | 4 | 0.07 | 3.9e-06 | 5.0 | -5.2 | 2.7e-07 | -0.75 | 0.25 | 0.63 | FALSE |
15 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | COX5B | 0.03 | 0.01 | lasso | 1 | 0.01 | 5.0e-02 | 5.4 | -5.4 | 8.0e-08 | -0.72 | 0.00 | 0.61 | FALSE |
16 | The Cancer Genome Atlas | Breast Invasive Carcinoma | TMEM131 | 0.06 | 0.01 | enet | 9 | 0.03 | 3.0e-06 | -3.2 | -5.2 | 2.1e-07 | -0.70 | 0.04 | 0.91 | FALSE |
17 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | TMEM131 | 0.08 | 0.00 | blup | 72 | 0.01 | 5.4e-02 | -1.4 | -5.3 | 1.3e-07 | -0.64 | 0.02 | 0.53 | FALSE |
18 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ZAP70 | 0.06 | 0.01 | blup | 38 | 0.00 | 2.1e-01 | 3.3 | 5.2 | 1.6e-07 | 0.76 | 0.02 | 0.19 | FALSE |