Best TWAS P=1.24e-07 · Best GWAS P=1.5e-08 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Nerve Tibial | ACO2 | 0.06 | 0.05 | lasso | 5 | 0.04 | 8.5e-04 | -4.8 | -5.2 | 1.6e-07 | 0.88 | 0.10 | 0.88 | FALSE |
2 | GTEx | Testis | TEF | 0.06 | 0.05 | lasso | 5 | 0.04 | 5.5e-03 | -5.2 | -5.1 | 2.9e-07 | 0.96 | 0.04 | 0.90 | FALSE |
3 | NTR | Blood | TEF | 0.01 | 0.02 | lasso | 2 | 0.02 | 3.8e-06 | -5.2 | -5.3 | 1.2e-07 | 0.97 | 0.02 | 0.97 | TRUE |
4 | YFS | Blood | TEF | 0.09 | 0.17 | lasso | 2 | 0.17 | 9.0e-53 | -5.3 | -5.3 | 1.3e-07 | 0.95 | 0.02 | 0.98 | FALSE |
5 | The Cancer Genome Atlas | Colon Adenocarcinoma | TEF | 0.04 | 0.03 | blup | 36 | 0.03 | 9.5e-03 | -4.8 | -5.3 | 1.4e-07 | 0.97 | 0.02 | 0.79 | FALSE |