Best TWAS P=4.21e-09 · Best GWAS P=4.26e-15 conditioned to 1.29e-05
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | The Cancer Genome Atlas | Glioblastoma Multiforme | KTELC1 | 0.21 | -0.01 | blup | 64 | 0.05 | 1.5e-02 | 1.9 | 5.9 | 4.2e-09 | -0.69 | 0.01 | 0.54 | TRUE |
| 2 | The Cancer Genome Atlas | Prostate Adenocarcinoma | ARHGAP31 | 0.13 | 0.02 | blup | 115 | 0.07 | 3.8e-08 | -4.9 | 5.5 | 3.6e-08 | -0.64 | 0.01 | 0.98 | TRUE |
| 3 | The Cancer Genome Atlas | Stomach Adenocarcinoma | KTELC1 | 0.23 | 0.07 | lasso | 3 | 0.14 | 5.3e-10 | 1.9 | 5.5 | 4.8e-08 | -0.56 | 0.23 | 0.76 | FALSE |