TWAS
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Genes
Traits
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Traits
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Blood Red Count
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chr10:93,657,148-95,151,622
Best TWAS P=3.2e-09 · Best GWAS P=6.25e-08 conditioned to 0.405
93.6M
93.8M
94M
94.2M
94.4M
94.6M
94.8M
95M
95.2M
0
2
4
6
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
The Cancer Genome Atlas
Lung Squamous Cell Carcinoma
HHEX
0.03
0.00
blup
28
0.02
1.4e-03
-5.0
-5.9
3.2e-09
-0.84
0.00
0.49
TRUE
2
GTEx
Testis
HHEX
0.11
0.02
enet
8
0.00
4.2e-01
-5.0
-5.4
8.0e-08
-0.86
0.01
0.85
FALSE
1
GTEx
Spleen
EIF2S2P3
0.32
0.04
enet
15
0.11
1.2e-03
-4.3
-5.2
1.7e-07
-0.76
0.02
0.69
FALSE
3
NTR
Blood
KIF11
0.11
0.10
lasso
8
0.10
3.0e-29
5.0
-5.2
1.7e-07
-0.91
0.03
0.97
FALSE