TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Blood Red Count
:
←
→
chr22:23,430,410-24,865,187
Best TWAS P=4.25e-10 · Best GWAS P=6.56e-08 conditioned to 0.122
23.4M
23.6M
23.8M
24M
24.2M
24.4M
24.6M
24.8M
0
2
4
6
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
The Cancer Genome Atlas
Lung Squamous Cell Carcinoma
C22orf15
0.04
0.00
blup
38
0.02
1.3e-03
4.1
6.2
4.2e-10
-0.69
0.01
0.46
TRUE
1
GTEx
Cells EBV-transformed lymphocytes
SMARCB1
0.31
0.15
lasso
16
0.12
7.6e-05
-5.4
-5.1
2.7e-07
0.95
0.01
0.97
FALSE