[Hub]/) : Traits : Blood Red Count :

chr4:69,713-1,514,081

Best TWAS P=6.36e-09 · Best GWAS P=1.82e-07 conditioned to 0.034

Associated models

# Study Tissue Gene h2 eQTL R2 model # weights model R2 model R2 P eQTL GWAS Z TWAS Z TWAS P Top SNP corr PP3 PP4 joint
1 GTEx Adipose Subcutaneous CPLX1 0.20 0.11 lasso 6 0.11 2.5e-09 -5.1 5.1 2.8e-07 -0.97 0.00 0.99 FALSE
2 GTEx Adipose Subcutaneous RP11-440L14.1 0.58 0.38 enet 36 0.48 1.9e-43 -4.5 5.2 2.1e-07 -0.69 0.11 0.86 FALSE
3 GTEx Brain Cerebellum PCGF3 0.55 0.29 enet 10 0.35 2.6e-11 -4.5 5.2 2.3e-07 -0.51 0.09 0.88 FALSE
4 GTEx Muscle Skeletal AC139887.4 0.12 0.10 enet 14 0.11 8.3e-11 -4.7 5.5 3.5e-08 -0.68 0.08 0.90 FALSE
5 GTEx Nerve Tibial CPLX1 0.26 0.05 lasso 5 0.09 1.1e-06 -5.2 5.3 1.3e-07 -0.93 0.00 0.99 FALSE
6 GTEx Thyroid CPLX1 0.17 0.07 enet 30 0.13 7.2e-10 -5.2 5.2 1.8e-07 -0.78 0.00 0.99 FALSE
7 The Cancer Genome Atlas Breast Invasive Carcinoma PCGF3 0.03 0.00 blup 69 0.01 3.7e-03 3.8 5.3 1.3e-07 -0.60 0.02 0.36 FALSE
8 The Cancer Genome Atlas Brain Lower Grade Glioma PCGF3 0.08 0.02 lasso 4 0.07 1.9e-08 -3.3 5.8 6.4e-09 -0.61 0.03 0.87 TRUE
9 The Cancer Genome Atlas Testicular Germ Cell Tumors PCGF3 0.13 0.00 blup 69 0.04 1.4e-02 -5.2 5.4 6.7e-08 -0.86 0.01 0.74 FALSE