Best TWAS P=1.47e-09 · Best GWAS P=6.08e-08 conditioned to 0.395
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Esophagus Mucosa | ADAM19 | 0.14 | 0.03 | enet | 19 | 0.09 | 2.4e-06 | -2.8 | 5.1 | 2.7e-07 | 0.65 | 0.04 | 0.92 | FALSE |
2 | GTEx | Muscle Skeletal | ADAM19 | 0.06 | 0.02 | lasso | 4 | 0.01 | 1.5e-02 | 4.8 | 5.7 | 1.3e-08 | 0.70 | 0.07 | 0.87 | FALSE |
3 | GTEx | Ovary | ADAM19 | 0.32 | 0.11 | lasso | 9 | 0.08 | 6.5e-03 | 3.6 | 5.2 | 2.4e-07 | 0.71 | 0.05 | 0.69 | FALSE |
4 | GTEx | Skin Not Sun Exposed Suprapubic | ADAM19 | 0.10 | 0.01 | lasso | 4 | 0.08 | 5.2e-05 | 4.8 | 6.0 | 1.5e-09 | 0.84 | 0.05 | 0.93 | FALSE |
5 | GTEx | Skin Sun Exposed Lower leg | ADAM19 | 0.07 | 0.04 | lasso | 6 | 0.06 | 1.2e-05 | 4.2 | 5.6 | 1.8e-08 | 0.70 | 0.10 | 0.86 | FALSE |
6 | GTEx | Testis | ADAM19 | 0.16 | 0.00 | enet | 17 | -0.01 | 6.7e-01 | 3.6 | 5.7 | 1.2e-08 | 0.70 | 0.06 | 0.71 | FALSE |
7 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ADAM19 | 0.08 | 0.02 | blup | 159 | 0.03 | 5.3e-04 | 4.2 | 5.4 | 7.4e-08 | 0.63 | 0.07 | 0.52 | FALSE |
8 | The Cancer Genome Atlas | Lung Adenocarcinoma | ADAM19 | 0.09 | 0.03 | lasso | 4 | 0.05 | 2.4e-06 | 4.9 | 6.0 | 1.5e-09 | 0.81 | 0.03 | 0.96 | TRUE |
9 | The Cancer Genome Atlas | Thyroid Carcinoma | ADAM19 | 0.07 | 0.00 | blup | 159 | 0.02 | 2.0e-03 | -2.8 | 5.1 | 2.8e-07 | 0.46 | 0.14 | 0.13 | FALSE |