850 significantly associated models · 194 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 7686056 | 11137778 | 5 | 3 | 8.6e-12 | 2.0e-11 | 2.5e-01 | 97 | ENO1 KIF1B RERE |
2 | 1 | 151055670 | 153103772 | 7 | 11 | 5.4e-13 | 2.1e-14 | 0.0e+00 | -5360 | FLG HRNR LINGO4 S100A11 SMCP |
3 | 1 | 166702558 | 168182443 | 1 | 1 | 2.2e-17 | 2.0e-17 | 1.0e+00 | 100 | CD247 |
4 | 1 | 172311679 | 173713130 | 2 | 1 | 8.7e-08 | 3.6e-08 | 3.1e-09 | -16 | TNFSF4 |
5 | 1 | 202317696 | 203743653 | 2 | 1 | 1.4e-09 | 1.2e-09 | 1.0e+00 | 100 | MYBPH |
6 | 2 | 102118712 | 104027106 | 6 | 8 | 7.2e-74 | 8.3e-60 | NaN | NaN | IL18R1 IL1R1 IL1RL1 SLC9A2 |
7 | 2 | 202952678 | 204788156 | 4 | 1 | 5.4e-09 | 1.0e-07 | 3.6e-01 | 97 | CARF |
8 | 2 | 241941773 | 243048760 | 8 | 2 | 5.3e-29 | 8.2e-28 | 4.9e-01 | 100 | AC093642.3 D2HGDH |
9 | 3 | 32339493 | 33825021 | 1 | 1 | 2.5e-08 | 9.1e-16 | 1.7e-09 | 44 | GLB1 |
10 | 3 | 127097277 | 128821807 | 2 | 1 | 5.0e-10 | 3.9e-09 | 3.0e-01 | 97 | EEFSEC |
11 | 3 | 195477791 | 197083723 | 2 | 2 | 5.1e-08 | 2.5e-09 | 1.6e-03 | 72 | NRROS SDHAP1 |
12 | 4 | 38097478 | 39643536 | 4 | 1 | 2.3e-16 | 2.8e-17 | 3.1e-03 | 88 | TLR1 |
13 | 4 | 122377715 | 124935698 | 2 | 5 | 4.5e-21 | 2.9e-17 | 1.0e+00 | 100 | KIAA1109 SPATA5 |
14 | 5 | 35608310 | 36124514 | 1 | 1 | 2.2e-09 | 6.4e-10 | 1.0e+00 | 100 | IL7R |
15 | 5 | 109381583 | 111527482 | 4 | 8 | 5.4e-18 | 4.0e-40 | NaN | NaN | CAMK4 SLC25A46 TSLP WDR36 |
16 | 5 | 130588008 | 132900729 | 15 | 7 | 1.1e-25 | 8.7e-30 | NaN | NaN | AC034220.3 KIF3A P4HA2-AS1 SLC22A5 |
17 | 5 | 139232299 | 140784895 | 4 | 1 | 1.9e-07 | 5.4e-07 | 3.7e-01 | 97 | SLC4A9 |
18 | 5 | 140789933 | 142230251 | 1 | 1 | 3.2e-13 | 6.3e-14 | 4.0e-03 | 85 | NDFIP1 |
19 | 5 | 156131251 | 157697754 | 1 | 1 | 1.5e-09 | 6.1e-08 | 4.0e-01 | 98 | ADAM19 |
20 | 6 | 34528785 | 35987507 | 3 | 1 | 4.9e-10 | 2.7e-10 | 6.7e-02 | 92 | ZNF76 |
21 | 6 | 63596112 | 64978456 | 2 | 1 | 5.0e-09 | 1.0e-08 | 1.9e-01 | 95 | PTP4A1 |
22 | 6 | 89941356 | 91704536 | 1 | 2 | 8.3e-19 | 7.5e-26 | 1.2e-05 | 83 | BACH2 |
23 | 6 | 134905567 | 136516257 | 2 | 2 | 8.1e-10 | 4.1e-08 | 6.5e-01 | 99 | AHI1 |
24 | 7 | 27623776 | 28468319 | 1 | 1 | 1.3e-11 | 2.3e-17 | 8.0e-08 | 60 | JAZF1 |
25 | 9 | 4934896 | 7345375 | 6 | 3 | 2.7e-27 | 3.8e-64 | 9.4e-28 | 58 | GLDC KIAA1432 RANBP6 |
26 | 10 | 5238196 | 7317647 | 2 | 2 | 3.4e-08 | 2.5e-09 | 1.0e+00 | 100 | FBXO18 PRKCQ |
27 | 10 | 74879374 | 76266883 | 1 | 1 | 1.2e-07 | 8.2e-07 | 6.5e-03 | 70 | RP11-574K11.5 |
28 | 10 | 93657148 | 95151622 | 3 | 1 | 1.7e-11 | 2.8e-12 | 8.8e-03 | 86 | HHEX |
29 | 11 | 36068766 | 36732916 | 1 | 1 | 1.9e-07 | 3.5e-09 | 7.0e-05 | 55 | PRR5L |
30 | 11 | 60549966 | 62346131 | 7 | 1 | 7.5e-14 | 1.4e-13 | 2.1e-01 | 97 | FADS3 |
31 | 11 | 64645119 | 66035608 | 1 | 1 | 1.9e-07 | 5.1e-09 | 4.0e-06 | 38 | FAM89B |
32 | 11 | 75678647 | 77069746 | 1 | 1 | 1.9e-27 | 1.1e-48 | 4.2e-24 | 52 | LRRC32 |
33 | 12 | 55601472 | 58677299 | 13 | 4 | 2.8e-19 | 1.3e-26 | 2.6e-03 | 92 | GPR182 KIF5A RPS26 STAT6 |
34 | 13 | 99047988 | 100728229 | 2 | 3 | 6.3e-13 | 2.1e-19 | 2.4e-03 | 89 | DOCK9-AS2 UBAC2 |
35 | 14 | 92733536 | 93401178 | 1 | 1 | 1.1e-07 | 5.9e-06 | 2.0e-02 | 74 | RIN3 |
36 | 15 | 40884719 | 42468786 | 2 | 1 | 6.2e-08 | 4.2e-08 | 1.7e-01 | 94 | RTF1 |
37 | 15 | 66662107 | 68789191 | 4 | 4 | 8.6e-39 | 5.5e-47 | 4.4e-04 | 94 | IQCH SMAD3 |
38 | 16 | 10325245 | 12138068 | 6 | 3 | 3.8e-19 | 2.3e-27 | 7.7e-06 | 83 | CLEC16A RMI2 RP11-396B14.2 |
39 | 16 | 26526350 | 28065536 | 4 | 1 | 6.1e-18 | 5.1e-16 | 1.9e-06 | 66 | IL4R |
40 | 16 | 88241380 | 89617518 | 1 | 1 | 2.8e-07 | 2.8e-07 | 3.1e-05 | 34 | TRAPPC2L |
41 | 17 | 29800656 | 31275580 | 1 | 1 | 6.8e-08 | 6.3e-05 | 6.6e-01 | 99 | RHOT1 |
42 | 17 | 36710513 | 39502398 | 24 | 9 | 1.0e-60 | 2.1e-58 | NaN | NaN | CASC3 GSDMB KRT222 MED1 MED24 ORMDL3 PGAP3 |
43 | 17 | 42413481 | 43570226 | 5 | 1 | 5.3e-09 | 1.8e-08 | 2.2e-03 | 70 | LOC644172 |
44 | 17 | 46888301 | 48347817 | 2 | 1 | 7.5e-13 | 9.9e-15 | 2.2e-03 | 84 | ZNF652 |
45 | 17 | 61805401 | 63197920 | 1 | 1 | 2.8e-08 | 8.1e-08 | 1.0e+00 | 100 | DDX5 |
46 | 17 | 80790388 | 81051007 | 1 | 1 | 3.8e-09 | 2.9e-05 | 1.0e-02 | 62 | METRNL |
47 | 19 | 45037368 | 45550407 | 1 | 1 | 1.1e-08 | 2.5e-08 | 4.4e-03 | 74 | CBLC |
48 | 19 | 45585167 | 46994833 | 3 | 1 | 1.0e-08 | 3.4e-09 | 1.0e+00 | 100 | DMWD |
49 | 20 | 61576647 | 62912463 | 6 | 1 | 3.2e-09 | 3.3e-08 | 6.6e-01 | 99 | SLC2A4RG |
50 | 21 | 39849553 | 41254456 | 1 | 1 | 2.3e-07 | 1.7e-07 | 1.0e+00 | 100 | PSMG1 |
51 | 22 | 41071659 | 42917154 | 13 | 1 | 4.9e-10 | 7.2e-10 | 2.0e-01 | 96 | PHF5A |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
The Cancer Genome Atlas | Stomach Adenocarcinoma | 13 | 0.771 | 2.6 |
GTEx | Heart Atrial Appendage | 8 | 0.506 | 2.5 |
GTEx | Spleen | 10 | 0.709 | 2.5 |
GTEx | Whole Blood | 14 | 0.704 | 2.5 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 21 | 0.836 | 2.5 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 11 | 0.660 | 2.5 |
GTEx | Brain Nucleus accumbens basal ganglia | 7 | 0.808 | 2.4 |
GTEx | Breast Mammary Tissue (Male) | 7 | 0.587 | 2.4 |
GTEx | Cells Transformed fibroblasts | 26 | 0.619 | 2.4 |
GTEx | Colon Transverse | 11 | 0.533 | 2.4 |
GTEx | Pancreas | 10 | 0.612 | 2.4 |
GTEx | Skin Not Sun Exposed Suprapubic | 22 | 0.894 | 2.4 |
GTEx | Skin Sun Exposed Lower leg | 22 | 0.605 | 2.4 |
NTR | Blood | 22 | 0.916 | 2.4 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 22 | 0.536 | 2.4 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 7 | 0.633 | 2.4 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 17 | 0.578 | 2.4 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 5 | 0.718 | 2.4 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 9 | 0.703 | 2.4 |
GTEx | Brain Cortex | 7 | 0.677 | 2.3 |
GTEx | Brain Frontal Cortex BA9 | 5 | 0.541 | 2.3 |
GTEx | Brain Hypothalamus | 2 | 0.338 | 2.3 |
GTEx | Breast Mammary Tissue | 13 | 0.658 | 2.3 |
GTEx | Colon Sigmoid | 8 | 0.547 | 2.3 |
GTEx | Lung | 11 | 0.383 | 2.3 |
GTEx | Pituitary | 6 | 0.538 | 2.3 |
GTEx | Thyroid | 26 | 0.650 | 2.3 |
YFS | Blood | 31 | 0.672 | 2.3 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 8 | 0.483 | 2.3 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 16 | 0.774 | 2.3 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 17 | 0.622 | 2.3 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 10 | 0.487 | 2.3 |
The Cancer Genome Atlas | Thyroid Carcinoma | 32 | 0.620 | 2.3 |
GTEx | Adipose Visceral Omentum | 8 | 0.393 | 2.2 |
GTEx | Artery Aorta | 14 | 0.470 | 2.2 |
GTEx | Artery Tibial | 20 | 0.532 | 2.2 |
GTEx | Brain Cerebellar Hemisphere | 3 | 0.201 | 2.2 |
GTEx | Brain Cerebellum | 6 | 0.303 | 2.2 |
GTEx | Brain Putamen basal ganglia | 5 | 0.801 | 2.2 |
GTEx | Esophagus Mucosa | 16 | 0.482 | 2.2 |
GTEx | Esophagus Muscularis | 14 | 0.433 | 2.2 |
GTEx | Muscle Skeletal | 15 | 0.519 | 2.2 |
GTEx | Nerve Tibial | 21 | 0.486 | 2.2 |
GTEx | Ovary | 6 | 0.660 | 2.2 |
GTEx | Prostate | 5 | 0.600 | 2.2 |
GTEx | Testis | 23 | 0.729 | 2.2 |
METSIM | Adipose | 22 | 0.478 | 2.2 |
ROSMAP | Brain Pre-frontal Cortex | 22 | 0.501 | 2.2 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 7 | 0.683 | 2.2 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 3 | 0.561 | 2.2 |
GTEx | Adipose Subcutaneous | 10 | 0.286 | 2.1 |
GTEx | Breast Mammary Tissue (Female) | 8 | 0.486 | 2.1 |
GTEx | Esophagus Gastroesophageal Junction | 7 | 0.484 | 2.1 |
GTEx | Stomach | 6 | 0.412 | 2.1 |
CommonMind | Brain Pre-frontal Cortex | 29 | 0.539 | 2.1 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 25 | 0.566 | 2.1 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 5 | 0.453 | 2.1 |
The Cancer Genome Atlas | Esophageal Carcinoma | 4 | 0.583 | 2.1 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 20 | 0.464 | 2.1 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 7 | 0.438 | 2.1 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 3 | 0.226 | 2.1 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 23 | 0.496 | 2.1 |
GTEx | Adrenal Gland | 3 | 0.206 | 2.0 |
GTEx | Artery Coronary | 1 | 0.084 | 2.0 |
GTEx | Brain Caudate basal ganglia | 5 | 0.543 | 2.0 |
GTEx | Cells EBV-transformed lymphocytes | 7 | 0.493 | 2.0 |
GTEx | Heart Left Ventricle | 5 | 0.327 | 2.0 |
GTEx | Liver | 3 | 0.418 | 2.0 |
GTEx | Uterus | 3 | 0.529 | 2.0 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 3 | 0.280 | 2.0 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 4 | 0.781 | 2.0 |
GTEx | Small Intestine Terminal Ileum | 0 | 0.000 | 1.9 |
GTEx | Brain Hippocampus | 2 | 0.381 | 1.8 |
GTEx | Vagina | 1 | 0.157 | 1.7 |