[Hub]/) : Traits : Schizophrenia (2018) : ← →

chr12:122,713,991-124,545,118

Best TWAS P=1.82e-09 · Best GWAS P=1.99e-09 conditioned to 0.0243

Associated models

#	Study	Tissue	Gene	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
1	GTEx	Cells Transformed fibroblasts	OGFOD2	0.10	0.07	lasso	7	0.07	3.1e-06	5.5	5.2	2.3e-07	0.93	0.09	0.91	FALSE
2	GTEx	Cells Transformed fibroblasts	ABCB9	0.08	0.12	enet	7	0.12	4.3e-09	5.3	5.4	7.3e-08	0.89	0.28	0.71	FALSE
3	GTEx	Cells Transformed fibroblasts	ARL6IP4	0.12	0.13	lasso	2	0.12	4.0e-09	5.3	-5.3	1.3e-07	-0.85	0.15	0.85	FALSE
4	GTEx	Heart Left Ventricle	ABCB9	0.10	0.14	lasso	5	0.10	4.2e-06	6.0	5.9	3.2e-09	0.95	0.01	0.99	FALSE
5	GTEx	Liver	ABCB9	0.32	0.32	lasso	3	0.28	1.9e-08	5.3	5.3	1.2e-07	0.88	0.12	0.85	FALSE
6	GTEx	Pancreas	ARL6IP4	0.07	0.07	lasso	2	0.07	9.6e-04	6.0	-5.4	6.1e-08	-0.93	0.04	0.88	FALSE
7	GTEx	Skin Not Sun Exposed Suprapubic	ABCB9	0.13	0.15	lasso	11	0.11	2.1e-06	5.3	5.5	4.7e-08	0.93	0.03	0.97	FALSE
8	GTEx	Skin Sun Exposed Lower leg	ABCB9	0.09	0.08	lasso	5	0.08	4.3e-07	5.3	5.7	1.3e-08	0.93	0.03	0.97	FALSE
9	GTEx	Testis	MPHOSPH9	0.28	0.27	enet	23	0.32	1.3e-14	4.7	5.2	2.5e-07	0.93	0.07	0.93	FALSE
10	GTEx	Testis	CDK2AP1	0.20	0.14	lasso	5	0.13	2.0e-06	5.8	-5.9	3.3e-09	-0.95	0.01	0.99	FALSE
11	GTEx	Testis	RP11-282O18.3	0.18	0.09	lasso	9	0.12	7.8e-06	5.8	-5.3	1.3e-07	-0.85	0.02	0.96	FALSE
12	NTR	Blood	SBNO1	0.02	0.02	lasso	2	0.02	5.5e-07	5.2	-5.2	1.7e-07	-0.85	0.13	0.87	FALSE
13	The Cancer Genome Atlas	Bladder Urothelial Carcinoma	OGFOD2	0.03	0.02	blup	16	0.01	5.0e-02	5.2	5.4	5.3e-08	0.86	0.01	0.85	FALSE
14	The Cancer Genome Atlas	Breast Invasive Carcinoma	C12orf65	0.02	0.00	enet	6	0.01	2.4e-03	6.0	-5.6	1.7e-08	-0.82	0.01	0.81	FALSE
15	The Cancer Genome Atlas	Kidney Renal Clear Cell Carcinoma	C12orf65	0.04	0.03	enet	18	0.03	4.9e-04	5.8	-6.0	1.8e-09	-0.75	0.01	0.91	TRUE
16	The Cancer Genome Atlas	Kidney Renal Papillary Cell Carcinoma	C12orf65	0.05	0.04	blup	34	0.05	1.0e-03	5.3	-5.9	4.6e-09	-0.95	0.01	0.91	FALSE
17	The Cancer Genome Atlas	Brain Lower Grade Glioma	C12orf65	0.03	0.01	blup	35	0.02	1.6e-03	5.8	-5.8	5.9e-09	-0.89	0.01	0.87	FALSE
18	The Cancer Genome Atlas	Liver Hepatocellular Carcinoma	ABCB9	0.19	0.22	enet	9	0.22	7.7e-11	5.2	5.7	1.6e-08	0.88	0.01	0.99	FALSE
19	The Cancer Genome Atlas	Lung Squamous Cell Carcinoma	ABCB9	0.06	0.06	enet	7	0.07	5.2e-08	5.3	5.3	1.5e-07	0.91	0.01	0.99	FALSE
20	The Cancer Genome Atlas	Prostate Adenocarcinoma	ABCB9	0.04	0.05	enet	10	0.05	1.2e-05	5.0	5.2	2.1e-07	0.90	0.01	0.99	FALSE
21	The Cancer Genome Atlas	Testicular Germ Cell Tumors	CDK2AP1	0.13	0.10	blup	34	0.11	8.2e-05	5.8	-5.4	8.4e-08	-0.93	0.01	0.97	FALSE
22	The Cancer Genome Atlas	Thyroid Carcinoma	OGFOD2	0.02	0.00	enet	4	0.02	2.7e-03	5.3	5.6	2.2e-08	0.88	0.01	0.68	FALSE
23	The Cancer Genome Atlas	Thyroid Carcinoma	PITPNM2	0.04	0.03	enet	5	0.05	8.1e-06	3.7	5.7	1.2e-08	0.78	0.03	0.97	FALSE