Best TWAS P=1.2e-10 · Best GWAS P=3.4e-07 conditioned to 0.111
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | RP5-855D21.2 | 0.16 | 0.13 | enet | 12 | 0.15 | 1.4e-12 | -4.5 | -5.6 | 2.4e-08 | -0.04 | 0.02 | 0.93 | FALSE |
2 | GTEx | Brain Cerebellar Hemisphere | CTD-2336O2.1 | 0.55 | 0.09 | enet | 6 | 0.00 | 2.8e-01 | -5.1 | 5.1 | 3.0e-07 | -0.96 | 0.02 | 0.85 | FALSE |
3 | GTEx | Cells Transformed fibroblasts | ZNF596 | 0.27 | 0.13 | lasso | 5 | 0.13 | 8.1e-10 | -4.6 | 5.2 | 1.9e-07 | 0.02 | 0.01 | 0.97 | FALSE |
4 | GTEx | Esophagus Mucosa | CLN8 | 0.17 | 0.00 | lasso | 4 | 0.00 | 3.3e-01 | -4.9 | 5.8 | 6.9e-09 | -0.82 | 0.03 | 0.59 | TRUE |
5 | GTEx | Esophagus Mucosa | CTD-2336O2.1 | 0.26 | 0.11 | enet | 27 | 0.12 | 1.5e-08 | -5.0 | 5.3 | 1.1e-07 | -0.82 | 0.01 | 0.98 | FALSE |
6 | GTEx | Lung | CLN8 | 0.17 | 0.07 | lasso | 4 | 0.07 | 3.8e-06 | -5.1 | 5.3 | 1.4e-07 | -0.94 | 0.01 | 0.99 | FALSE |
7 | GTEx | Skin Not Sun Exposed Suprapubic | CTD-2336O2.1 | 0.46 | 0.18 | lasso | 10 | 0.15 | 2.2e-08 | -5.0 | 5.4 | 5.4e-08 | -0.93 | 0.01 | 0.98 | FALSE |
8 | GTEx | Skin Sun Exposed Lower leg | CTD-2336O2.1 | 0.22 | 0.14 | lasso | 4 | 0.15 | 3.1e-12 | -4.9 | 5.3 | 1.1e-07 | -0.95 | 0.01 | 0.98 | FALSE |
9 | GTEx | Whole Blood | ERICH1 | 0.26 | 0.08 | enet | 27 | 0.19 | 6.2e-17 | 3.3 | 5.7 | 1.0e-08 | 0.02 | 0.01 | 0.98 | FALSE |
10 | METSIM | Adipose | CLN8 | 0.10 | 0.05 | enet | 18 | 0.08 | 1.3e-11 | -5.0 | 5.2 | 2.2e-07 | -0.86 | 0.01 | 0.99 | FALSE |
11 | NTR | Blood | ERICH1 | 0.27 | 0.18 | enet | 54 | 0.31 | 5.5e-101 | 4.2 | 6.4 | 1.2e-10 | 0.05 | 0.10 | 0.79 | TRUE |
12 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | RPL23AP53 | 0.12 | 0.06 | enet | 9 | 0.07 | 2.4e-05 | -4.6 | -5.2 | 2.4e-07 | -0.02 | 0.00 | 0.96 | FALSE |
13 | The Cancer Genome Atlas | Thyroid Carcinoma | RPL23AP53 | 0.52 | 0.24 | lasso | 6 | 0.38 | 1.2e-39 | -4.6 | -5.5 | 3.0e-08 | -0.04 | 0.00 | 0.98 | TRUE |