Best TWAS P=1.72e-15 · Best GWAS P=2.21e-16 conditioned to 1
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Esophagus Muscularis | EIF2S2P3 | 0.09 | 0.04 | lasso | 6 | 0.04 | 1.1e-03 | -8.0 | -7.7 | 9.6e-15 | 0.93 | 0.01 | 0.97 | FALSE |
| 2 | GTEx | Prostate | EIF2S2P3 | 0.21 | 0.05 | lasso | 4 | 0.11 | 1.1e-03 | -8.0 | -5.9 | 3.1e-09 | 0.83 | 0.02 | 0.76 | FALSE |
| 3 | GTEx | Spleen | EIF2S2P3 | 0.32 | 0.04 | enet | 15 | 0.11 | 1.2e-03 | -5.4 | -7.1 | 8.8e-13 | 0.78 | 0.03 | 0.69 | FALSE |
| 4 | GTEx | Testis | HHEX | 0.11 | 0.02 | enet | 8 | 0.00 | 4.2e-01 | -6.0 | -5.9 | 3.3e-09 | 0.69 | 0.09 | 0.23 | FALSE |
| 5 | GTEx | Thyroid | EIF2S2P3 | 0.15 | 0.14 | lasso | 2 | 0.14 | 6.2e-11 | -8.0 | -8.0 | 1.7e-15 | 0.99 | 0.01 | 0.99 | TRUE |
| 6 | NTR | Blood | KIF11 | 0.11 | 0.10 | lasso | 8 | 0.10 | 3.0e-29 | 6.1 | -6.3 | 2.2e-10 | 0.76 | 1.00 | 0.00 | FALSE |
| 7 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | HHEX | 0.03 | 0.00 | blup | 28 | 0.02 | 1.4e-03 | -4.7 | -5.8 | 5.9e-09 | 0.69 | 0.01 | 0.37 | FALSE |