Best TWAS P=2.13e-08 · Best GWAS P=4.48e-08 conditioned to 0.533
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | RGS14 | 0.29 | 0.16 | lasso | 7 | 0.20 | 2.2e-23 | 5.5 | -5.5 | 3.4e-08 | -0.92 | 0.00 | 1.00 | FALSE |
2 | GTEx | Adipose Subcutaneous | RGS14 | 0.31 | 0.10 | lasso | 3 | 0.10 | 2.8e-08 | 5.3 | -5.2 | 1.5e-07 | -0.89 | 0.00 | 1.00 | FALSE |
3 | GTEx | Adrenal Gland | RGS14 | 0.28 | 0.24 | lasso | 4 | 0.24 | 3.7e-09 | 5.3 | -5.5 | 3.9e-08 | -0.86 | 0.00 | 1.00 | FALSE |
4 | GTEx | Artery Aorta | RGS14 | 0.35 | 0.31 | lasso | 6 | 0.29 | 1.5e-16 | 5.5 | -5.3 | 9.1e-08 | -0.96 | 0.00 | 1.00 | FALSE |
5 | GTEx | Artery Tibial | RGS14 | 0.49 | 0.12 | enet | 10 | 0.14 | 6.2e-11 | 5.5 | -5.2 | 2.2e-07 | -0.93 | 0.00 | 1.00 | FALSE |
6 | GTEx | Breast Mammary Tissue | RGS14 | 0.13 | 0.14 | lasso | 1 | 0.11 | 2.0e-06 | 5.5 | -5.5 | 4.8e-08 | -0.96 | 0.00 | 1.00 | FALSE |
7 | GTEx | Cells Transformed fibroblasts | RGS14 | 0.52 | 0.39 | lasso | 6 | 0.47 | 4.9e-39 | 5.5 | -5.3 | 8.7e-08 | -0.93 | 0.00 | 1.00 | FALSE |
8 | GTEx | Esophagus Muscularis | RGS14 | 0.13 | 0.12 | enet | 3 | 0.15 | 3.7e-09 | 5.5 | -5.3 | 1.2e-07 | -0.92 | 0.00 | 1.00 | FALSE |
9 | GTEx | Heart Atrial Appendage | RGS14 | 0.18 | 0.18 | lasso | 2 | 0.20 | 2.5e-09 | 5.5 | -5.6 | 2.2e-08 | -0.94 | 0.00 | 1.00 | TRUE |
10 | GTEx | Heart Left Ventricle | RGS14 | 0.20 | 0.11 | lasso | 2 | 0.08 | 3.6e-05 | 5.5 | -5.5 | 5.2e-08 | -0.95 | 0.00 | 1.00 | FALSE |
11 | GTEx | Lung | RGS14 | 0.12 | 0.11 | lasso | 1 | 0.08 | 5.5e-07 | 5.5 | -5.5 | 4.8e-08 | -0.96 | 0.00 | 1.00 | FALSE |
12 | GTEx | Nerve Tibial | RGS14 | 0.22 | 0.10 | lasso | 6 | 0.08 | 1.8e-06 | 5.3 | -5.5 | 3.3e-08 | -0.91 | 0.00 | 1.00 | FALSE |
13 | GTEx | Pituitary | RGS14 | 0.48 | 0.34 | lasso | 6 | 0.35 | 1.4e-09 | 5.5 | -5.5 | 3.1e-08 | -0.94 | 0.00 | 1.00 | FALSE |
14 | GTEx | Skin Sun Exposed Lower leg | RGS14 | 0.15 | 0.16 | lasso | 3 | 0.15 | 9.1e-13 | 5.5 | -5.5 | 3.1e-08 | -0.95 | 0.00 | 1.00 | FALSE |
15 | GTEx | Testis | RGS14 | 0.63 | 0.47 | enet | 9 | 0.47 | 4.8e-23 | 5.5 | -5.5 | 4.8e-08 | -0.92 | 0.00 | 1.00 | FALSE |
16 | GTEx | Thyroid | RGS14 | 0.15 | 0.14 | enet | 9 | 0.13 | 2.2e-10 | 5.3 | -5.5 | 4.4e-08 | -0.86 | 0.00 | 1.00 | FALSE |
17 | GTEx | Uterus | MXD3 | 0.51 | 0.10 | enet | 30 | 0.24 | 1.1e-05 | 4.0 | -5.3 | 1.5e-07 | -0.52 | 0.05 | 0.34 | FALSE |
18 | ROSMAP | Brain Pre-frontal Cortex | RGS14 | 0.32 | 0.35 | enet | 12 | 0.38 | 1.1e-51 | 4.7 | -5.3 | 8.7e-08 | -0.91 | 0.13 | 0.87 | FALSE |
19 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | RGS14 | 0.09 | 0.08 | enet | 7 | 0.10 | 1.2e-08 | 5.5 | -5.3 | 1.1e-07 | -0.92 | 0.00 | 1.00 | FALSE |
20 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | RGS14 | 0.05 | 0.03 | enet | 5 | 0.05 | 7.2e-06 | 5.5 | -5.6 | 2.8e-08 | -0.87 | 0.00 | 1.00 | FALSE |
21 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | RGS14 | 0.14 | 0.12 | lasso | 3 | 0.13 | 2.1e-14 | 5.3 | -5.4 | 5.5e-08 | -0.85 | 0.01 | 0.99 | FALSE |
22 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | RGS14 | 0.13 | 0.13 | lasso | 2 | 0.14 | 1.1e-09 | 5.5 | -5.6 | 2.1e-08 | -0.92 | 0.00 | 1.00 | FALSE |
23 | The Cancer Genome Atlas | Stomach Adenocarcinoma | RGS14 | 0.03 | 0.03 | lasso | 2 | 0.04 | 1.3e-03 | 5.5 | -5.5 | 3.1e-08 | -0.95 | 0.00 | 0.96 | FALSE |
24 | The Cancer Genome Atlas | Thyroid Carcinoma | RGS14 | 0.26 | 0.18 | lasso | 5 | 0.19 | 4.5e-18 | 4.5 | -5.1 | 3.1e-07 | -0.92 | 0.03 | 0.97 | FALSE |