TWAS
hub
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Models
Genes
Traits
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Traits
:
Alcohol intake versus 10 years previously
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chr1:43,699,813-45,157,738
Best TWAS P=1.26e-07 · Best GWAS P=4.92e-08 conditioned to 0.017
43.8M
44M
44.2M
44.4M
44.6M
44.8M
45M
45.2M
0
2
4
6
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
5
The Cancer Genome Atlas
Prostate Adenocarcinoma
DPH2
0.03
0.03
enet
7
0.04
5.8e-05
4.4
5.3
1.3e-07
0.72
0.01
0.83
TRUE
2
GTEx
Brain Cortex
ARTN
0.13
0.04
lasso
5
0.03
5.9e-02
5.4
5.2
1.5e-07
0.76
0.04
0.84
FALSE
3
GTEx
Cells Transformed fibroblasts
CCDC24
0.07
0.00
enet
16
0.02
9.5e-03
3.8
5.2
1.6e-07
0.51
0.09
0.57
FALSE
1
GTEx
Brain Cerebellum
ARTN
0.47
0.33
lasso
5
0.43
6.0e-14
5.4
5.2
1.7e-07
0.82
0.04
0.96
FALSE
4
METSIM
Adipose
ARTN
0.05
0.04
bslmm
412
0.03
1.3e-05
5.2
5.2
2.3e-07
0.81
0.06
0.94
FALSE