TWAS
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Models
Genes
Traits
[Hub]/) :
Traits
:
Comparative height size at age 10
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chr6:160,071,844-161,786,694
Best TWAS P=5.21e-09 · Best GWAS P=9.33e-13 conditioned to 0.805
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
GTEx
Esophagus Mucosa
SLC22A3
0.19
0.08
enet
47
0.12
1.7e-08
4.1
-5.8
5.2e-09
-0.58
0.64
0.35
TRUE
1
CommonMind
Brain Pre-frontal Cortex
LPA
0.10
0.02
lasso
5
0.04
3.2e-06
2.7
-5.8
6.2e-09
-0.62
0.04
0.91
TRUE
3
GTEx
Brain Caudate basal ganglia
SLC22A3
0.15
0.10
enet
39
0.11
5.6e-04
-6.2
-5.7
1.6e-08
-0.71
0.04
0.89
FALSE
5
ROSMAP
Brain Pre-frontal Cortex
SLC22A3
0.14
0.20
lasso
10
0.19
2.4e-24
-5.4
-5.5
4.1e-08
-0.67
1.00
0.00
FALSE
2
GTEx
Adipose Visceral Omentum
SLC22A3
0.13
0.06
enet
7
0.09
1.3e-05
-4.9
-5.2
2.3e-07
-0.63
0.53
0.46
FALSE