Best TWAS P=8.56e-12 · Best GWAS P=1.95e-07 conditioned to 0.035
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | FBXO17 | 0.05 | 0.02 | blup | 54 | 0.03 | 2.5e-04 | 5.1 | 6.8 | 8.6e-12 | 0.49 | 0.01 | 0.86 | TRUE |
| 2 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | FBXO27 | 0.04 | 0.05 | enet | 8 | 0.06 | 1.2e-07 | -4.8 | 5.2 | 2.1e-07 | 0.86 | 0.03 | 0.96 | FALSE |