TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Comparative height size at age 10
:
←
→
chr4:105,373,669-107,092,169
Best TWAS P=8.37e-09 · Best GWAS P=4e-10 conditioned to 0.00175
105.4M
105.6M
105.8M
106M
106.2M
106.4M
106.6M
106.8M
107M
0
2
4
6
8
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
5
GTEx
Skin Sun Exposed Lower leg
TET2
0.09
0.01
enet
18
0.02
3.6e-03
-6.3
-5.8
8.4e-09
0.70
0.01
0.94
TRUE
3
GTEx
Esophagus Mucosa
PPA2
0.18
0.06
enet
14
0.12
2.5e-08
5.2
-5.5
3.1e-08
0.71
0.06
0.93
FALSE
2
GTEx
Esophagus Gastroesophageal Junction
PPA2
0.29
0.15
lasso
5
0.14
8.8e-06
-5.7
-5.3
8.6e-08
0.87
0.02
0.96
FALSE
4
GTEx
Ovary
PPA2
0.18
0.10
lasso
3
0.14
2.2e-04
-4.2
-5.2
1.7e-07
0.76
0.04
0.81
FALSE
1
GTEx
Brain Cortex
PPA2
0.14
0.09
lasso
9
0.09
1.6e-03
-5.3
-5.2
2.5e-07
0.87
0.03
0.75
FALSE