Best TWAS P=2.29e-11 · Best GWAS P=1.69e-10 conditioned to 0.877
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | SLC9B1 | 0.13 | 0.23 | enet | 24 | 0.24 | 4.4e-29 | -6.3 | 5.7 | 1.1e-08 | -0.91 | 0.04 | 0.96 | FALSE |
2 | GTEx | Adipose Subcutaneous | CISD2 | 0.06 | 0.09 | enet | 12 | 0.06 | 7.3e-06 | -6.2 | 5.9 | 4.0e-09 | -0.96 | 0.05 | 0.95 | FALSE |
3 | GTEx | Adrenal Gland | CISD2 | 0.08 | 0.03 | lasso | 2 | 0.03 | 4.1e-02 | -6.4 | 6.4 | 1.4e-10 | -0.97 | 0.04 | 0.88 | FALSE |
4 | GTEx | Artery Aorta | UBE2D3 | 0.07 | 0.06 | lasso | 5 | 0.04 | 3.5e-03 | -6.2 | 6.2 | 5.5e-10 | -0.99 | 0.05 | 0.92 | FALSE |
5 | GTEx | Artery Aorta | CISD2 | 0.10 | 0.08 | lasso | 4 | 0.06 | 1.8e-04 | -6.2 | 6.2 | 4.2e-10 | -0.98 | 0.04 | 0.95 | FALSE |
6 | GTEx | Artery Coronary | CISD2 | 0.14 | 0.15 | lasso | 8 | 0.12 | 7.4e-05 | 5.8 | 5.9 | 4.8e-09 | -0.93 | 0.05 | 0.92 | FALSE |
7 | GTEx | Artery Tibial | CISD2 | 0.11 | 0.12 | lasso | 4 | 0.10 | 3.1e-08 | -6.2 | 6.1 | 1.1e-09 | -0.99 | 0.05 | 0.95 | FALSE |
8 | GTEx | Brain Cerebellum | MANBA | 0.18 | 0.03 | enet | 27 | 0.05 | 1.2e-02 | -4.2 | 5.2 | 2.0e-07 | -0.60 | 0.08 | 0.30 | FALSE |
9 | GTEx | Brain Cerebellum | CISD2 | 0.13 | 0.18 | lasso | 3 | 0.17 | 1.1e-05 | -6.2 | 6.2 | 5.7e-10 | -0.99 | 0.04 | 0.95 | FALSE |
10 | GTEx | Breast Mammary Tissue (Male) | CISD2 | 0.15 | 0.02 | lasso | 3 | -0.01 | 6.5e-01 | -6.3 | 5.9 | 2.9e-09 | -0.95 | 0.04 | 0.40 | FALSE |
11 | GTEx | Cells Transformed fibroblasts | MANBA | 0.26 | 0.22 | lasso | 9 | 0.27 | 1.9e-20 | -4.1 | -5.7 | 1.4e-08 | 0.76 | 0.92 | 0.08 | FALSE |
12 | GTEx | Cells Transformed fibroblasts | UBE2D3 | 0.11 | 0.09 | enet | 13 | 0.08 | 2.3e-06 | -6.2 | 6.1 | 1.2e-09 | -0.99 | 0.05 | 0.95 | FALSE |
13 | GTEx | Cells Transformed fibroblasts | CISD2 | 0.16 | 0.17 | enet | 12 | 0.13 | 9.7e-10 | -6.3 | 6.4 | 2.1e-10 | -0.98 | 0.05 | 0.95 | FALSE |
14 | GTEx | Colon Sigmoid | CISD2 | 0.20 | 0.24 | enet | 15 | 0.13 | 2.1e-05 | -6.2 | 6.5 | 8.4e-11 | -0.96 | 0.05 | 0.95 | FALSE |
15 | GTEx | Colon Transverse | CISD2 | 0.12 | 0.09 | enet | 19 | 0.06 | 1.0e-03 | -6.3 | 5.7 | 1.4e-08 | -0.85 | 0.05 | 0.92 | FALSE |
16 | GTEx | Esophagus Gastroesophageal Junction | CISD2 | 0.10 | 0.05 | enet | 6 | 0.04 | 1.6e-02 | 5.8 | 6.0 | 2.8e-09 | -0.96 | 0.05 | 0.84 | FALSE |
17 | GTEx | Esophagus Mucosa | CISD2 | 0.12 | 0.06 | enet | 13 | 0.05 | 2.1e-04 | -6.2 | 6.0 | 1.8e-09 | -0.96 | 0.05 | 0.95 | FALSE |
18 | GTEx | Esophagus Muscularis | CISD2 | 0.19 | 0.22 | enet | 25 | 0.21 | 6.2e-13 | -6.2 | 6.7 | 2.3e-11 | -0.95 | 0.05 | 0.95 | TRUE |
19 | GTEx | Nerve Tibial | UBE2D3 | 0.14 | 0.07 | lasso | 5 | 0.04 | 4.9e-04 | -5.8 | 6.1 | 1.3e-09 | -0.73 | 0.11 | 0.57 | FALSE |
20 | GTEx | Nerve Tibial | CISD2 | 0.19 | 0.14 | enet | 43 | 0.14 | 7.5e-10 | -6.2 | 5.6 | 2.6e-08 | -0.79 | 0.04 | 0.96 | FALSE |
21 | GTEx | Ovary | CISD2 | 0.12 | 0.12 | lasso | 4 | 0.07 | 6.9e-03 | -6.3 | 6.3 | 3.3e-10 | -0.98 | 0.05 | 0.78 | FALSE |
22 | GTEx | Pancreas | UBE2D3 | 0.13 | 0.09 | enet | 12 | 0.12 | 6.7e-06 | -4.3 | 5.8 | 7.1e-09 | -0.89 | 0.05 | 0.95 | FALSE |
23 | GTEx | Skin Not Sun Exposed Suprapubic | UBE2D3 | 0.11 | 0.00 | enet | 17 | 0.00 | 2.5e-01 | -2.0 | 5.4 | 5.7e-08 | -0.68 | 0.05 | 0.79 | FALSE |
24 | GTEx | Skin Not Sun Exposed Suprapubic | CISD2 | 0.13 | 0.14 | enet | 18 | 0.10 | 6.0e-06 | -6.1 | 5.9 | 3.6e-09 | -0.96 | 0.04 | 0.96 | FALSE |
25 | GTEx | Skin Sun Exposed Lower leg | CISD2 | 0.12 | 0.20 | lasso | 14 | 0.20 | 1.1e-16 | -6.2 | 6.1 | 9.3e-10 | -0.98 | 0.04 | 0.96 | FALSE |
26 | GTEx | Small Intestine Terminal Ileum | CISD2 | 0.29 | 0.19 | enet | 34 | 0.15 | 3.2e-04 | -6.4 | 6.1 | 9.1e-10 | -0.94 | 0.05 | 0.86 | FALSE |
27 | GTEx | Testis | CISD2 | 0.10 | 0.04 | lasso | 5 | 0.03 | 1.3e-02 | -6.2 | 5.5 | 3.2e-08 | -0.92 | 0.04 | 0.89 | FALSE |
28 | GTEx | Thyroid | CISD2 | 0.12 | 0.07 | lasso | 3 | 0.05 | 8.8e-05 | -6.3 | 6.2 | 4.2e-10 | -0.98 | 0.04 | 0.96 | FALSE |
29 | GTEx | Uterus | CISD2 | 0.34 | 0.22 | enet | 25 | 0.19 | 8.9e-05 | -6.3 | 5.8 | 7.8e-09 | -0.93 | 0.05 | 0.91 | FALSE |
30 | METSIM | Adipose | UBE2D3 | 0.04 | 0.02 | bslmm | 332 | 0.03 | 2.0e-05 | -6.2 | 5.6 | 1.7e-08 | -0.81 | 0.06 | 0.91 | FALSE |
31 | ROSMAP | Brain Pre-frontal Cortex | MANBA | 0.20 | 0.30 | enet | 26 | 0.31 | 2.3e-40 | -5.6 | 5.3 | 1.2e-07 | -0.71 | 0.62 | 0.38 | FALSE |
32 | ROSMAP | Brain Pre-frontal Cortex | UBE2D3 | 0.05 | 0.06 | blup | 337 | 0.07 | 5.0e-09 | -6.3 | 5.8 | 6.3e-09 | -0.95 | 0.04 | 0.96 | FALSE |
33 | ROSMAP | Brain Pre-frontal Cortex | CISD2 | 0.15 | 0.34 | lasso | 9 | 0.34 | 1.2e-44 | -6.4 | 6.3 | 2.2e-10 | -1.00 | 0.04 | 0.96 | FALSE |
34 | ROSMAP | Brain Pre-frontal Cortex | RP11-10L12.4 | 0.08 | 0.10 | lasso | 7 | 0.09 | 5.1e-12 | -6.2 | 6.0 | 2.4e-09 | -0.97 | 0.04 | 0.96 | FALSE |
35 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | MANBA | 0.10 | 0.13 | lasso | 4 | 0.11 | 1.8e-09 | -5.8 | -5.8 | 6.2e-09 | 0.75 | 0.12 | 0.88 | FALSE |
36 | The Cancer Genome Atlas | Breast Invasive Carcinoma | MANBA | 0.11 | 0.16 | lasso | 4 | 0.16 | 3.4e-32 | -5.8 | -5.6 | 2.7e-08 | 0.74 | 0.13 | 0.87 | FALSE |
37 | The Cancer Genome Atlas | Colon Adenocarcinoma | MANBA | 0.33 | 0.11 | enet | 13 | 0.21 | 2.0e-12 | -3.7 | -5.6 | 2.1e-08 | 0.79 | 0.02 | 0.98 | FALSE |
38 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | MANBA | 0.03 | 0.03 | blup | 71 | 0.04 | 2.0e-05 | -4.7 | -5.8 | 5.6e-09 | 0.87 | 0.04 | 0.96 | FALSE |
39 | The Cancer Genome Atlas | Brain Lower Grade Glioma | UBE2D3 | 0.02 | 0.02 | enet | 6 | 0.02 | 3.7e-03 | -6.2 | 5.7 | 9.6e-09 | -0.96 | 0.02 | 0.81 | FALSE |
40 | The Cancer Genome Atlas | Lung Adenocarcinoma | CISD2 | 0.02 | 0.02 | enet | 7 | 0.02 | 1.3e-03 | 5.6 | -6.2 | 6.0e-10 | 0.88 | 0.01 | 0.86 | FALSE |
41 | The Cancer Genome Atlas | Lung Adenocarcinoma | MANBA | 0.13 | 0.10 | blup | 69 | 0.10 | 4.5e-12 | -5.8 | -5.5 | 4.6e-08 | 0.81 | 0.13 | 0.87 | FALSE |
42 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | CISD2 | 0.05 | 0.01 | blup | 18 | 0.06 | 1.9e-03 | -6.2 | 6.3 | 2.3e-10 | -0.99 | 0.01 | 0.69 | FALSE |
43 | The Cancer Genome Atlas | Prostate Adenocarcinoma | MANBA | 0.11 | 0.04 | lasso | 7 | 0.04 | 3.5e-05 | -5.8 | -5.4 | 7.7e-08 | 0.72 | 0.12 | 0.87 | FALSE |
44 | The Cancer Genome Atlas | Prostate Adenocarcinoma | UBE2D3 | 0.03 | 0.04 | enet | 11 | 0.03 | 1.4e-04 | -6.2 | 6.3 | 3.3e-10 | -0.99 | 0.02 | 0.97 | FALSE |
45 | The Cancer Genome Atlas | Thyroid Carcinoma | CISD2 | 0.05 | 0.08 | enet | 5 | 0.06 | 1.9e-06 | -6.2 | 6.3 | 3.8e-10 | -0.99 | 0.01 | 0.99 | FALSE |