Best TWAS P=1.19e-08 · Best GWAS P=1.79e-06 conditioned to 0.818
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | YEATS4 | 0.37 | 0.23 | lasso | 7 | 0.45 | 4.6e-61 | -3.3 | 5.2 | 2.5e-07 | 0.75 | 0.08 | 0.77 | FALSE |
2 | GTEx | Artery Aorta | YEATS4 | 0.25 | 0.12 | enet | 11 | 0.21 | 5.0e-12 | 4.4 | 5.7 | 1.2e-08 | 0.86 | 0.02 | 0.94 | TRUE |
3 | GTEx | Artery Coronary | YEATS4 | 0.34 | 0.10 | lasso | 11 | 0.12 | 7.0e-05 | -2.9 | 5.3 | 1.0e-07 | 0.55 | 0.05 | 0.53 | FALSE |
4 | GTEx | Artery Tibial | YEATS4 | 0.37 | 0.23 | enet | 21 | 0.35 | 3.2e-28 | -3.3 | 5.2 | 2.0e-07 | 0.59 | 0.27 | 0.16 | FALSE |
5 | GTEx | Nerve Tibial | YEATS4 | 0.32 | 0.22 | enet | 15 | 0.32 | 2.6e-23 | -3.3 | 5.2 | 2.1e-07 | 0.69 | 0.27 | 0.17 | FALSE |
6 | GTEx | Prostate | YEATS4 | 0.40 | 0.01 | lasso | 6 | 0.06 | 1.6e-02 | 4.4 | 5.2 | 1.8e-07 | 0.79 | 0.02 | 0.37 | FALSE |
7 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | YEATS4 | 0.26 | 0.18 | enet | 17 | 0.29 | 4.9e-33 | -3.5 | 5.5 | 4.2e-08 | 0.69 | 0.20 | 0.24 | FALSE |
8 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | YEATS4 | 0.19 | 0.04 | enet | 15 | 0.08 | 4.2e-04 | -3.3 | 5.2 | 2.5e-07 | 0.65 | 0.02 | 0.63 | FALSE |
9 | The Cancer Genome Atlas | Thyroid Carcinoma | YEATS4 | 0.39 | 0.27 | enet | 12 | 0.47 | 1.2e-50 | -3.3 | 5.2 | 2.4e-07 | 0.69 | 0.21 | 0.18 | FALSE |