Best TWAS P=1.89e-09 · Best GWAS P=2.75e-09 conditioned to 0.00497
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | RBM6 | 0.16 | 0.19 | lasso | 9 | 0.19 | 1.2e-22 | -5.0 | -5.2 | 1.5e-07 | 0.63 | 0.17 | 0.82 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | RNF123 | 0.14 | 0.10 | blup | 324 | 0.12 | 4.7e-14 | 4.8 | 5.3 | 1.4e-07 | -0.51 | 0.69 | 0.30 | FALSE |
3 | GTEx | Artery Aorta | UBA7 | 0.06 | 0.02 | enet | 12 | 0.01 | 5.3e-02 | 4.5 | -5.3 | 1.0e-07 | 0.69 | 0.09 | 0.78 | FALSE |
4 | GTEx | Brain Cortex | RBM6 | 0.21 | 0.25 | lasso | 4 | 0.29 | 8.8e-09 | -5.0 | -6.0 | 2.4e-09 | 0.84 | 0.06 | 0.94 | FALSE |
5 | GTEx | Brain Cortex | RNF123 | 0.23 | 0.05 | enet | 33 | 0.04 | 2.4e-02 | 4.5 | 5.3 | 1.4e-07 | -0.57 | 0.10 | 0.63 | FALSE |
6 | GTEx | Brain Nucleus accumbens basal ganglia | RBM6 | 0.20 | 0.19 | enet | 29 | 0.22 | 2.0e-06 | -5.0 | -5.9 | 4.2e-09 | 0.69 | 0.12 | 0.87 | FALSE |
7 | GTEx | Cells Transformed fibroblasts | RBM6 | 0.27 | 0.29 | enet | 17 | 0.31 | 1.3e-23 | -5.0 | -5.2 | 2.3e-07 | 0.58 | 0.22 | 0.78 | FALSE |
8 | GTEx | Lung | TCTA | 0.09 | 0.01 | enet | 10 | 0.03 | 3.3e-03 | 3.2 | 5.5 | 4.1e-08 | -0.26 | 0.06 | 0.10 | TRUE |
9 | GTEx | Thyroid | MST1R | 0.06 | 0.06 | enet | 9 | 0.05 | 1.7e-04 | 4.5 | 5.4 | 6.2e-08 | -0.65 | 0.26 | 0.72 | FALSE |
10 | METSIM | Adipose | RBM6 | 0.22 | 0.34 | lasso | 15 | 0.34 | 1.7e-52 | -4.9 | -5.4 | 8.6e-08 | 0.63 | 0.16 | 0.84 | FALSE |
11 | METSIM | Adipose | RNF123 | 0.03 | 0.02 | lasso | 12 | 0.02 | 2.0e-04 | 4.5 | 5.3 | 1.5e-07 | -0.57 | 0.25 | 0.71 | FALSE |
12 | ROSMAP | Brain Pre-frontal Cortex | RBM6 | 0.21 | 0.32 | enet | 31 | 0.34 | 1.5e-44 | -5.0 | -5.3 | 1.3e-07 | 0.60 | 0.23 | 0.77 | FALSE |
13 | The Cancer Genome Atlas | Breast Invasive Carcinoma | RBM6 | 0.03 | 0.04 | blup | 79 | 0.05 | 9.5e-10 | -5.0 | -5.3 | 9.6e-08 | 0.61 | 0.17 | 0.82 | FALSE |
14 | The Cancer Genome Atlas | Breast Invasive Carcinoma | UBA7 | 0.01 | 0.01 | enet | 5 | 0.01 | 6.6e-04 | 4.5 | -5.4 | 7.6e-08 | 0.60 | 0.02 | 0.96 | FALSE |
15 | The Cancer Genome Atlas | Colon Adenocarcinoma | UBA7 | 0.11 | 0.06 | enet | 5 | 0.05 | 7.6e-04 | 4.5 | -5.5 | 3.3e-08 | 0.60 | 0.02 | 0.98 | FALSE |
16 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | RBM6 | 0.09 | 0.11 | blup | 79 | 0.11 | 3.8e-12 | -4.9 | -5.2 | 2.0e-07 | 0.66 | 0.20 | 0.80 | FALSE |
17 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MST1R | 0.08 | 0.07 | enet | 10 | 0.09 | 2.6e-10 | 4.5 | 5.2 | 2.3e-07 | -0.50 | 0.02 | 0.98 | FALSE |
18 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | RBM6 | 0.16 | 0.12 | blup | 79 | 0.09 | 4.4e-04 | -5.0 | -6.0 | 1.9e-09 | 0.68 | 0.12 | 0.85 | TRUE |