91 significantly associated models · 35 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 119761038 | 120687115 | 2 | 1 | 7.7e-09 | 5.5e-09 | 1.0e+00 | 100 | NOTCH2 |
2 | 1 | 213759712 | 215206914 | 1 | 1 | 2.6e-07 | 1.3e-07 | 1.2e-02 | 77 | SMYD2 |
3 | 2 | 26883355 | 28402863 | 5 | 1 | 1.4e-09 | 2.2e-10 | 1.0e+00 | 100 | FNDC4 |
4 | 3 | 22998569 | 23879862 | 1 | 1 | 9.3e-09 | 8.6e-10 | 1.1e-02 | 83 | UBE2E2 |
5 | 3 | 48757291 | 50833360 | 5 | 2 | 1.9e-09 | 2.7e-09 | 5.0e-03 | 78 | RBM6 TCTA |
6 | 3 | 185112300 | 185786406 | 1 | 1 | 3.9e-19 | 4.8e-24 | 9.1e-07 | 76 | IGF2BP2 |
7 | 4 | 5575751 | 7002344 | 1 | 1 | 1.4e-15 | 1.5e-16 | 3.6e-04 | 81 | WFS1 |
8 | 6 | 6582123 | 8009760 | 1 | 1 | 2.8e-11 | 3.0e-07 | 2.0e-03 | 64 | SSR1 |
9 | 7 | 27623776 | 28468319 | 1 | 1 | 2.5e-13 | 4.2e-15 | 1.9e-03 | 84 | JAZF1 |
10 | 7 | 73624615 | 74494207 | 1 | 1 | 3.5e-08 | 1.3e-07 | 1.0e+00 | 100 | PMS2P5 |
11 | 8 | 40811597 | 42450441 | 1 | 2 | 1.9e-10 | 7.4e-12 | 1.7e-01 | 96 | ANK1 |
12 | 10 | 80443273 | 81901722 | 1 | 1 | 4.3e-10 | 6.2e-12 | 3.7e-04 | 73 | ZCCHC24 |
13 | 10 | 93657148 | 95151622 | 3 | 1 | 1.3e-15 | 5.6e-16 | 6.7e-02 | 95 | EIF2S2P3 |
14 | 10 | 113511441 | 115622375 | 2 | 1 | 1.5e-36 | 2.2e-124 | 2.1e-95 | 24 | TCF7L2 |
15 | 11 | 16709350 | 18106069 | 3 | 1 | 8.9e-10 | 1.4e-10 | 1.0e+00 | 100 | KCNJ11 |
16 | 15 | 75648650 | 76164348 | 1 | 1 | 1.1e-07 | 2.0e-05 | 1.9e-02 | 70 | SNUPN |
17 | 16 | 52772129 | 54210447 | 1 | 1 | 1.7e-07 | 1.2e-17 | 3.3e-16 | 9 | RBL2 |
18 | 19 | 12309739 | 13750618 | 4 | 1 | 1.1e-08 | 7.0e-08 | 6.5e-01 | 99 | DAND5 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Ovary | 1 | 0.110 | 1.8 |
GTEx | Artery Aorta | 3 | 0.101 | 1.7 |
GTEx | Brain Cerebellar Hemisphere | 2 | 0.134 | 1.7 |
GTEx | Brain Cerebellum | 1 | 0.050 | 1.7 |
GTEx | Brain Cortex | 3 | 0.290 | 1.7 |
GTEx | Thyroid | 4 | 0.100 | 1.7 |
GTEx | Adipose Subcutaneous | 2 | 0.057 | 1.6 |
GTEx | Adipose Visceral Omentum | 0 | 0.000 | 1.6 |
GTEx | Artery Tibial | 0 | 0.000 | 1.6 |
GTEx | Breast Mammary Tissue | 0 | 0.000 | 1.6 |
GTEx | Breast Mammary Tissue (Male) | 0 | 0.000 | 1.6 |
GTEx | Breast Mammary Tissue (Female) | 0 | 0.000 | 1.6 |
GTEx | Cells EBV-transformed lymphocytes | 0 | 0.000 | 1.6 |
GTEx | Cells Transformed fibroblasts | 3 | 0.071 | 1.6 |
GTEx | Colon Sigmoid | 0 | 0.000 | 1.6 |
GTEx | Colon Transverse | 0 | 0.000 | 1.6 |
GTEx | Esophagus Mucosa | 3 | 0.090 | 1.6 |
GTEx | Esophagus Muscularis | 3 | 0.093 | 1.6 |
GTEx | Heart Atrial Appendage | 2 | 0.127 | 1.6 |
GTEx | Lung | 1 | 0.035 | 1.6 |
GTEx | Muscle Skeletal | 2 | 0.069 | 1.6 |
GTEx | Nerve Tibial | 1 | 0.023 | 1.6 |
GTEx | Pancreas | 1 | 0.061 | 1.6 |
GTEx | Pituitary | 1 | 0.090 | 1.6 |
GTEx | Prostate | 1 | 0.120 | 1.6 |
GTEx | Skin Not Sun Exposed Suprapubic | 2 | 0.081 | 1.6 |
GTEx | Skin Sun Exposed Lower leg | 3 | 0.082 | 1.6 |
GTEx | Spleen | 1 | 0.071 | 1.6 |
GTEx | Testis | 5 | 0.158 | 1.6 |
GTEx | Vagina | 0 | 0.000 | 1.6 |
GTEx | Whole Blood | 1 | 0.050 | 1.6 |
CommonMind | Brain Pre-frontal Cortex | 6 | 0.112 | 1.6 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 1 | 0.048 | 1.6 |
The Cancer Genome Atlas | Esophageal Carcinoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 1 | 0.098 | 1.6 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 0 | 0.000 | 1.6 |
GTEx | Adrenal Gland | 0 | 0.000 | 1.5 |
GTEx | Artery Coronary | 1 | 0.085 | 1.5 |
GTEx | Brain Frontal Cortex BA9 | 0 | 0.000 | 1.5 |
GTEx | Brain Hippocampus | 0 | 0.000 | 1.5 |
GTEx | Brain Nucleus accumbens basal ganglia | 1 | 0.116 | 1.5 |
GTEx | Esophagus Gastroesophageal Junction | 1 | 0.069 | 1.5 |
GTEx | Heart Left Ventricle | 0 | 0.000 | 1.5 |
GTEx | Small Intestine Terminal Ileum | 0 | 0.000 | 1.5 |
GTEx | Stomach | 0 | 0.000 | 1.5 |
METSIM | Adipose | 5 | 0.108 | 1.5 |
NTR | Blood | 4 | 0.167 | 1.5 |
ROSMAP | Brain Pre-frontal Cortex | 2 | 0.046 | 1.5 |
YFS | Blood | 1 | 0.022 | 1.5 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 1 | 0.060 | 1.5 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 2 | 0.045 | 1.5 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 2 | 0.073 | 1.5 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 4 | 0.098 | 1.5 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 2 | 0.098 | 1.5 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 3 | 0.070 | 1.5 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 2 | 0.068 | 1.5 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 1 | 0.022 | 1.5 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 1 | 0.078 | 1.5 |
The Cancer Genome Atlas | Thyroid Carcinoma | 2 | 0.039 | 1.5 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 0 | 0.000 | 1.5 |
GTEx | Brain Caudate basal ganglia | 0 | 0.000 | 1.4 |
GTEx | Brain Hypothalamus | 0 | 0.000 | 1.4 |
GTEx | Brain Putamen basal ganglia | 0 | 0.000 | 1.4 |
GTEx | Liver | 1 | 0.139 | 1.4 |
GTEx | Uterus | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 1 | 0.040 | 1.4 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 0 | 0.000 | 1.4 |