Best TWAS P=3.23e-70 · Best GWAS P=2.9e-88 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | WDR1 | 0.04 | 0.01 | enet | 10 | 0.03 | 3.8e-04 | -13.1 | 6.1 | 9.4e-10 | -0.06 | 0.27 | 0.02 | TRUE |
2 | GTEx | Adipose Subcutaneous | SLC2A9 | 0.06 | 0.06 | lasso | 2 | 0.04 | 6.1e-04 | -13.0 | 12.9 | 3.7e-38 | -0.38 | 0.42 | 0.06 | FALSE |
3 | GTEx | Adipose Subcutaneous | RP11-448G15.3 | 0.08 | 0.06 | lasso | 4 | 0.07 | 3.8e-06 | 7.2 | 6.5 | 7.7e-11 | -0.40 | 0.69 | 0.02 | FALSE |
4 | GTEx | Adipose Visceral Omentum | SLC2A9 | 0.15 | 0.02 | lasso | 4 | 0.04 | 3.6e-03 | 11.8 | 9.4 | 4.4e-21 | -0.19 | 0.31 | 0.08 | FALSE |
5 | GTEx | Adipose Visceral Omentum | RP11-448G15.3 | 0.10 | 0.02 | lasso | 6 | 0.03 | 9.6e-03 | -19.1 | 17.7 | 3.2e-70 | -0.65 | 0.10 | 0.19 | TRUE |
6 | GTEx | Adrenal Gland | RP11-448G15.3 | 0.10 | 0.07 | enet | 10 | 0.05 | 9.2e-03 | 7.2 | 10.4 | 1.9e-25 | -0.56 | 0.11 | 0.44 | FALSE |
7 | GTEx | Artery Aorta | SLC2A9 | 0.06 | 0.08 | enet | 4 | 0.08 | 3.7e-05 | 6.5 | 6.8 | 7.4e-12 | -0.40 | 0.86 | 0.01 | FALSE |
8 | GTEx | Artery Aorta | RP11-448G15.3 | 0.11 | 0.10 | lasso | 4 | 0.07 | 6.6e-05 | 7.2 | 5.7 | 1.4e-08 | -0.34 | 0.88 | 0.01 | FALSE |
9 | GTEx | Artery Coronary | SLC2A9 | 0.11 | 0.11 | enet | 4 | 0.08 | 8.6e-04 | 5.9 | 9.4 | 4.1e-21 | -0.32 | 0.42 | 0.06 | FALSE |
10 | GTEx | Artery Tibial | WDR1 | 0.19 | 0.06 | enet | 26 | 0.10 | 1.6e-08 | 6.8 | 9.1 | 8.7e-20 | -0.44 | 0.99 | 0.00 | FALSE |
11 | GTEx | Artery Tibial | SLC2A9 | 0.25 | 0.29 | lasso | 6 | 0.27 | 4.2e-21 | 7.2 | 7.8 | 5.7e-15 | -0.42 | 1.00 | 0.00 | FALSE |
12 | GTEx | Artery Tibial | ZNF518B | 0.06 | 0.07 | lasso | 4 | 0.04 | 2.2e-04 | 6.9 | 6.9 | 4.5e-12 | -0.27 | 0.94 | 0.00 | FALSE |
13 | GTEx | Artery Tibial | RP11-448G15.3 | 0.22 | 0.11 | enet | 25 | 0.16 | 8.7e-13 | 7.2 | 8.5 | 1.6e-17 | -0.40 | 0.98 | 0.00 | FALSE |
14 | GTEx | Breast Mammary Tissue | RP11-448G15.3 | 0.18 | 0.01 | lasso | 10 | 0.07 | 2.2e-04 | -15.3 | 13.7 | 1.5e-42 | -0.69 | 0.41 | 0.22 | FALSE |
15 | GTEx | Cells EBV-transformed lymphocytes | SLC2A9 | 0.25 | 0.18 | lasso | 6 | 0.18 | 2.0e-06 | -4.6 | -5.9 | 3.3e-09 | 0.46 | 0.87 | 0.05 | TRUE |
16 | GTEx | Cells Transformed fibroblasts | RP11-448G15.3 | 0.07 | 0.03 | lasso | 3 | 0.03 | 3.8e-03 | 6.8 | 7.4 | 1.3e-13 | -0.35 | 0.75 | 0.01 | FALSE |
17 | GTEx | Colon Sigmoid | SLC2A9 | 0.26 | 0.11 | lasso | 13 | 0.15 | 5.9e-06 | 5.8 | 7.6 | 2.9e-14 | -0.34 | 0.67 | 0.05 | TRUE |
18 | GTEx | Colon Transverse | SLC2A9 | 0.08 | 0.04 | lasso | 1 | 0.01 | 7.7e-02 | 6.7 | 6.7 | 2.4e-11 | -0.37 | 0.19 | 0.04 | TRUE |
19 | GTEx | Colon Transverse | RP11-448G15.3 | 0.12 | 0.00 | lasso | 6 | 0.00 | 6.5e-01 | 7.7 | 6.5 | 1.1e-10 | -0.14 | 0.20 | 0.04 | TRUE |
20 | GTEx | Esophagus Gastroesophageal Junction | SLC2A9 | 0.18 | 0.10 | enet | 25 | 0.12 | 6.2e-05 | 7.2 | 5.6 | 1.9e-08 | -0.27 | 0.15 | 0.06 | FALSE |
21 | GTEx | Esophagus Mucosa | RP11-448G15.3 | 0.07 | 0.01 | enet | 10 | 0.02 | 1.2e-02 | -2.6 | 10.1 | 4.8e-24 | -0.32 | 0.37 | 0.06 | TRUE |
22 | GTEx | Esophagus Muscularis | SLC2A9 | 0.19 | 0.14 | lasso | 6 | 0.22 | 1.2e-13 | 6.0 | 8.2 | 1.6e-16 | -0.36 | 1.00 | 0.00 | FALSE |
23 | GTEx | Esophagus Muscularis | RP11-448G15.3 | 0.11 | 0.00 | enet | 14 | 0.03 | 1.1e-02 | -2.6 | 8.4 | 3.3e-17 | -0.36 | 0.25 | 0.07 | FALSE |
24 | GTEx | Liver | SLC2A9 | 0.18 | 0.13 | lasso | 6 | 0.12 | 3.7e-04 | 6.5 | 8.3 | 1.4e-16 | -0.04 | 0.34 | 0.04 | TRUE |
25 | GTEx | Nerve Tibial | WDR1 | 0.12 | 0.02 | lasso | 5 | 0.03 | 1.8e-03 | 7.9 | 11.6 | 3.2e-31 | -0.44 | 0.32 | 0.18 | FALSE |
26 | GTEx | Nerve Tibial | RP11-448G15.3 | 0.22 | 0.10 | enet | 27 | 0.23 | 2.6e-16 | 7.2 | 10.9 | 1.5e-27 | -0.41 | 1.00 | 0.00 | FALSE |
27 | GTEx | Skin Sun Exposed Lower leg | SLC2A9 | 0.18 | 0.03 | enet | 15 | 0.06 | 1.2e-05 | 12.3 | 11.9 | 6.7e-33 | -0.27 | 0.57 | 0.06 | FALSE |
28 | GTEx | Thyroid | RP11-448G15.3 | 0.17 | 0.05 | enet | 40 | 0.12 | 1.3e-09 | 7.2 | 6.6 | 5.4e-11 | -0.29 | 0.90 | 0.00 | FALSE |
29 | GTEx | Whole Blood | SLC2A9 | 0.11 | 0.04 | lasso | 6 | 0.05 | 9.9e-06 | 6.0 | 6.7 | 2.7e-11 | -0.38 | 0.92 | 0.00 | FALSE |
30 | METSIM | Adipose | SLC2A9 | 0.05 | 0.04 | lasso | 4 | 0.03 | 9.3e-06 | 11.8 | 10.9 | 1.5e-27 | -0.25 | 1.00 | 0.00 | FALSE |
31 | ROSMAP | Brain Pre-frontal Cortex | RP11-448G15.3 | 0.06 | 0.04 | blup | 552 | 0.05 | 7.9e-07 | 7.2 | 12.2 | 4.8e-34 | -0.58 | 0.96 | 0.03 | FALSE |
32 | The Cancer Genome Atlas | Breast Invasive Carcinoma | WDR1 | 0.04 | 0.02 | lasso | 5 | 0.03 | 1.7e-06 | -8.0 | -5.3 | 1.1e-07 | 0.06 | 0.98 | 0.00 | TRUE |
33 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | ZNF518B | 0.08 | 0.04 | lasso | 2 | 0.01 | 1.2e-01 | -6.3 | -6.5 | 9.5e-11 | 0.22 | 0.02 | 0.11 | FALSE |
34 | The Cancer Genome Atlas | Esophageal Carcinoma | SLC2A9 | 0.16 | 0.02 | enet | 20 | 0.05 | 1.4e-02 | 6.6 | 5.8 | 6.4e-09 | -0.12 | 0.04 | 0.05 | FALSE |
35 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ZNF518B | 0.09 | 0.01 | enet | 8 | 0.04 | 2.7e-05 | -6.3 | -5.9 | 3.0e-09 | 0.12 | 0.27 | 0.04 | FALSE |
36 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | SLC2A9 | 0.11 | 0.06 | lasso | 2 | 0.05 | 3.9e-04 | 6.0 | -6.5 | 1.1e-10 | 0.29 | 0.56 | 0.07 | FALSE |
37 | The Cancer Genome Atlas | Stomach Adenocarcinoma | WDR1 | 0.06 | 0.03 | blup | 111 | 0.01 | 3.2e-02 | 6.7 | -9.2 | 4.8e-20 | 0.31 | 0.02 | 0.58 | FALSE |