TWAS
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Traits
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Traits
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Medication: Levothyroxine sodium
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chr15:38,088,200-39,556,796
Best TWAS P=4.68e-12 · Best GWAS P=1.67e-13 conditioned to 1
38.2M
38.4M
38.6M
38.8M
39M
39.2M
39.4M
39.6M
0
5
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
5
The Cancer Genome Atlas
Prostate Adenocarcinoma
RASGRP1
0.05
0.03
lasso
2
0.02
1.9e-03
7.4
6.9
4.7e-12
0.97
0.01
0.97
TRUE
2
GTEx
Skin Not Sun Exposed Suprapubic
RASGRP1
0.37
0.44
lasso
5
0.42
3.6e-25
6.2
6.3
3.4e-10
0.77
0.87
0.13
FALSE
1
GTEx
Esophagus Mucosa
RASGRP1
0.31
0.34
lasso
5
0.33
6.6e-23
6.2
6.2
4.3e-10
0.77
0.87
0.13
FALSE
3
GTEx
Skin Sun Exposed Lower leg
RASGRP1
0.37
0.33
lasso
6
0.38
1.2e-32
6.1
6.0
2.3e-09
0.76
0.88
0.12
FALSE
4
The Cancer Genome Atlas
Colon Adenocarcinoma
RASGRP1
0.10
0.01
blup
67
0.02
1.9e-02
3.4
5.2
2.4e-07
0.67
0.03
0.31
FALSE