Best TWAS P=1.04e-33 · Best GWAS P=3.19e-33 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | AKR1C1 | 0.30 | 0.16 | bslmm | 703 | 0.18 | 3.5e-21 | 3.3 | 7.2 | 4.7e-13 | -0.55 | 1.00 | 0.00 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | AKR1C2 | 0.31 | 0.06 | bslmm | 665 | 0.16 | 2.1e-19 | 2.6 | -8.2 | 1.6e-16 | 0.74 | 0.10 | 0.90 | FALSE |
3 | GTEx | Adrenal Gland | AKR1C1 | 0.33 | 0.08 | enet | 11 | 0.07 | 1.8e-03 | 4.2 | -5.3 | 8.9e-08 | 0.42 | 0.49 | 0.04 | FALSE |
4 | GTEx | Artery Tibial | AKR1C2 | 0.14 | 0.10 | enet | 10 | 0.15 | 1.2e-11 | -11.9 | -11.3 | 8.8e-30 | 0.94 | 0.00 | 1.00 | FALSE |
5 | GTEx | Brain Cerebellar Hemisphere | AKR1C1 | 0.46 | 0.14 | lasso | 4 | 0.23 | 1.4e-06 | -6.2 | 10.3 | 7.5e-25 | -0.85 | 0.01 | 0.96 | FALSE |
6 | GTEx | Brain Cerebellum | AKR1C2 | 0.27 | 0.04 | enet | 12 | 0.11 | 4.1e-04 | -11.9 | -7.0 | 1.8e-12 | 0.68 | 0.01 | 0.97 | FALSE |
7 | GTEx | Brain Cortex | AKR1C2 | 0.49 | 0.10 | lasso | 11 | 0.26 | 1.1e-07 | -12.0 | -10.0 | 1.6e-23 | 0.85 | 0.00 | 0.98 | FALSE |
8 | GTEx | Brain Hippocampus | AKR1C2 | 0.35 | 0.13 | lasso | 9 | 0.16 | 1.3e-04 | -6.5 | -6.3 | 3.9e-10 | 0.49 | 0.07 | 0.78 | FALSE |
9 | GTEx | Cells Transformed fibroblasts | AKR1C2 | 0.28 | 0.23 | lasso | 6 | 0.21 | 1.9e-15 | -12.0 | -12.1 | 1.0e-33 | 1.00 | 0.00 | 1.00 | TRUE |
10 | GTEx | Esophagus Muscularis | AKR1C2 | 0.30 | 0.21 | lasso | 2 | 0.19 | 8.5e-12 | -12.0 | -12.0 | 3.6e-33 | 1.00 | 0.00 | 1.00 | FALSE |
11 | GTEx | Heart Atrial Appendage | AKR1C2 | 0.28 | 0.37 | lasso | 3 | 0.29 | 1.2e-13 | -11.9 | -11.9 | 1.7e-32 | 0.98 | 0.00 | 1.00 | FALSE |
12 | GTEx | Muscle Skeletal | AKR1C2 | 0.11 | 0.03 | enet | 9 | 0.05 | 2.0e-05 | -1.8 | 7.2 | 4.8e-13 | -0.55 | 0.06 | 0.84 | FALSE |
13 | GTEx | Ovary | AKR1C3 | 0.35 | 0.20 | lasso | 9 | 0.22 | 3.9e-06 | -12.0 | -11.5 | 8.1e-31 | 0.91 | 0.00 | 0.97 | FALSE |
14 | GTEx | Skin Sun Exposed Lower leg | AKR1C2 | 0.17 | 0.18 | lasso | 2 | 0.18 | 4.0e-15 | -11.9 | -12.0 | 4.8e-33 | 1.00 | 0.00 | 1.00 | FALSE |
15 | GTEx | Testis | AKR1C2 | 0.44 | 0.36 | lasso | 4 | 0.36 | 8.5e-17 | -12.0 | -11.8 | 3.2e-32 | 1.00 | 0.00 | 1.00 | FALSE |
16 | GTEx | Testis | AKR1C1 | 0.28 | 0.04 | enet | 39 | 0.07 | 3.7e-04 | -11.8 | 8.9 | 7.3e-19 | -0.62 | 0.01 | 0.94 | FALSE |
17 | ROSMAP | Brain Pre-frontal Cortex | AKR1C2 | 0.56 | 0.40 | enet | 28 | 0.46 | 1.0e-65 | -12.0 | -11.5 | 9.0e-31 | 0.93 | 0.00 | 1.00 | FALSE |
18 | ROSMAP | Brain Pre-frontal Cortex | AKR1C1 | 0.39 | 0.28 | lasso | 6 | 0.32 | 9.1e-42 | 3.3 | 6.7 | 1.7e-11 | -0.61 | 1.00 | 0.00 | FALSE |
19 | The Cancer Genome Atlas | Breast Invasive Carcinoma | AKR1C1 | 0.01 | 0.00 | blup | 81 | 0.01 | 7.5e-03 | 4.4 | -5.6 | 1.8e-08 | 0.43 | 0.03 | 0.39 | FALSE |
20 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | AKR1C1 | 0.07 | 0.04 | enet | 10 | 0.02 | 1.0e-03 | -11.8 | 11.2 | 3.1e-29 | -0.88 | 0.00 | 0.98 | FALSE |
21 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | AKR1C2 | 0.12 | 0.11 | lasso | 6 | 0.09 | 1.6e-10 | -12.0 | -12.0 | 3.8e-33 | 1.00 | 0.00 | 1.00 | FALSE |
22 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | AKR1C1 | 0.15 | 0.02 | blup | 81 | 0.06 | 2.0e-04 | 3.3 | 6.7 | 1.6e-11 | -0.59 | 0.00 | 0.86 | FALSE |
23 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | AKR1C2 | 0.29 | 0.21 | lasso | 1 | 0.21 | 4.7e-12 | -11.9 | -11.9 | 1.9e-32 | 0.98 | 0.01 | 0.99 | FALSE |
24 | The Cancer Genome Atlas | Brain Lower Grade Glioma | AKR1C2 | 0.09 | 0.05 | blup | 62 | 0.05 | 3.4e-06 | -11.8 | -10.7 | 1.4e-26 | 0.89 | 0.00 | 1.00 | FALSE |
25 | The Cancer Genome Atlas | Prostate Adenocarcinoma | AKR1C2 | 0.39 | 0.18 | enet | 14 | 0.23 | 2.5e-23 | -12.0 | -10.9 | 1.6e-27 | 0.85 | 0.00 | 1.00 | FALSE |
26 | The Cancer Genome Atlas | Soft Tissue Sarcoma | AKR1C2 | 0.07 | 0.04 | enet | 5 | 0.06 | 1.1e-04 | -6.2 | -9.1 | 6.8e-20 | 0.74 | 0.02 | 0.79 | FALSE |
27 | The Cancer Genome Atlas | Thyroid Carcinoma | AKR1C2 | 0.09 | 0.08 | lasso | 3 | 0.08 | 7.2e-08 | -11.8 | -11.3 | 1.5e-29 | 0.90 | 0.00 | 1.00 | FALSE |