Best TWAS P=4.33e-15 · Best GWAS P=8.63e-15 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Visceral Omentum | DMWD | 0.11 | 0.13 | lasso | 2 | 0.16 | 7.3e-09 | 6.6 | 7.7 | 1.3e-14 | -0.85 | 0.04 | 0.96 | FALSE |
2 | GTEx | Artery Aorta | DMWD | 0.28 | 0.19 | lasso | 3 | 0.15 | 1.2e-08 | -7.3 | 7.3 | 4.0e-13 | -0.94 | 0.02 | 0.98 | FALSE |
3 | GTEx | Artery Tibial | DMWD | 0.22 | 0.17 | lasso | 8 | 0.16 | 6.8e-13 | -7.3 | 7.7 | 1.7e-14 | -0.97 | 0.01 | 0.99 | FALSE |
4 | GTEx | Artery Tibial | AC074212.6 | 0.14 | 0.04 | lasso | 5 | 0.06 | 2.4e-05 | -7.7 | 5.8 | 7.8e-09 | -0.87 | 0.01 | 0.99 | FALSE |
5 | GTEx | Lung | DMPK | 0.10 | 0.05 | lasso | 3 | 0.05 | 5.4e-05 | 6.6 | 7.5 | 5.3e-14 | -0.77 | 0.04 | 0.96 | FALSE |
6 | GTEx | Muscle Skeletal | DMWD | 0.06 | 0.01 | lasso | 6 | 0.01 | 1.9e-02 | -7.3 | 7.0 | 2.8e-12 | -0.91 | 0.01 | 0.97 | FALSE |
7 | GTEx | Nerve Tibial | DMWD | 0.24 | 0.07 | lasso | 6 | 0.06 | 5.8e-05 | -7.3 | 7.1 | 1.1e-12 | -0.86 | 0.03 | 0.97 | FALSE |
8 | GTEx | Skin Sun Exposed Lower leg | DMPK | 0.13 | 0.08 | lasso | 3 | 0.07 | 2.5e-06 | 6.6 | 6.6 | 3.2e-11 | -0.60 | 0.80 | 0.20 | FALSE |
9 | GTEx | Skin Sun Exposed Lower leg | DMWD | 0.10 | 0.07 | lasso | 4 | 0.07 | 4.1e-06 | 6.6 | 6.4 | 1.3e-10 | -0.59 | 0.19 | 0.78 | FALSE |
10 | GTEx | Skin Sun Exposed Lower leg | AC074212.6 | 0.13 | 0.08 | enet | 27 | 0.08 | 7.2e-07 | 6.6 | 6.5 | 7.6e-11 | -0.58 | 0.15 | 0.84 | FALSE |
11 | GTEx | Testis | DMPK | 0.19 | 0.11 | lasso | 4 | 0.07 | 3.2e-04 | 5.2 | 5.7 | 1.4e-08 | -0.44 | 0.57 | 0.17 | FALSE |
12 | GTEx | Testis | DMWD | 0.19 | 0.15 | lasso | 3 | 0.13 | 2.7e-06 | 6.7 | 6.7 | 2.7e-11 | -0.60 | 0.56 | 0.29 | FALSE |
13 | GTEx | Thyroid | DMPK | 0.13 | 0.11 | lasso | 2 | 0.12 | 1.3e-09 | 6.6 | 7.5 | 6.8e-14 | -0.78 | 0.21 | 0.79 | FALSE |
14 | GTEx | Thyroid | DMWD | 0.11 | 0.12 | lasso | 3 | 0.11 | 6.7e-09 | 6.6 | 7.7 | 1.5e-14 | -0.83 | 0.03 | 0.97 | FALSE |
15 | GTEx | Thyroid | AC074212.6 | 0.08 | 0.10 | lasso | 2 | 0.09 | 1.8e-07 | -7.3 | 7.3 | 2.1e-13 | -0.95 | 0.02 | 0.98 | FALSE |
16 | GTEx | Whole Blood | DMPK | 0.07 | 0.04 | lasso | 5 | 0.02 | 2.2e-03 | 6.6 | 6.3 | 2.2e-10 | -0.55 | 0.15 | 0.73 | FALSE |
17 | GTEx | Whole Blood | AC074212.6 | 0.07 | 0.04 | lasso | 3 | 0.02 | 4.2e-03 | 6.6 | 6.3 | 3.9e-10 | -0.57 | 0.11 | 0.80 | FALSE |
18 | YFS | Blood | DMWD | 0.06 | 0.04 | enet | 19 | 0.05 | 3.8e-15 | 6.6 | 5.7 | 1.3e-08 | -0.46 | 0.91 | 0.09 | FALSE |
19 | The Cancer Genome Atlas | Breast Invasive Carcinoma | DMWD | 0.01 | 0.00 | blup | 42 | 0.01 | 7.3e-03 | 1.9 | -6.7 | 2.1e-11 | 0.83 | 0.01 | 0.80 | FALSE |
20 | The Cancer Genome Atlas | Breast Invasive Carcinoma | FOXA3 | 0.03 | 0.02 | blup | 53 | 0.02 | 1.9e-04 | -7.8 | 6.6 | 3.6e-11 | -0.77 | 0.00 | 0.99 | FALSE |
21 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | SIX5 | 0.05 | 0.05 | lasso | 8 | 0.03 | 7.6e-03 | -7.5 | -7.8 | 4.3e-15 | 0.98 | 0.01 | 0.95 | TRUE |