TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Smoking status: Current
:
←
→
chr22:41,604,557-42,180,584
Best TWAS P=5.17e-08 · Best GWAS P=1.86e-07 conditioned to 0.111
41.6M
41.7M
41.8M
41.9M
42M
42.1M
42.2M
0
2
4
6
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
The Cancer Genome Atlas
Lung Squamous Cell Carcinoma
PHF5A
0.03
0.00
blup
30
0.01
0.0286
-4.3
-5.4
5.2e-08
-0.77
0.01
0.53
TRUE
3
The Cancer Genome Atlas
Lung Squamous Cell Carcinoma
TOB2
0.03
0.00
blup
28
0.02
0.0034
-4.4
-5.4
5.8e-08
-0.68
0.01
0.24
FALSE
4
The Cancer Genome Atlas
Testicular Germ Cell Tumors
POLR3H
0.10
0.02
blup
23
0.06
0.0034
-4.3
5.2
2.4e-07
0.72
0.02
0.44
FALSE
1
The Cancer Genome Atlas
Kidney Renal Papillary Cell Carcinoma
ACO2
0.03
0.01
blup
41
0.04
0.0039
5.2
-5.1
2.8e-07
-0.71
0.01
0.56
FALSE