Best TWAS P=4.49e-21 · Best GWAS P=2.35e-26 conditioned to 0.000562
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | FBXO38 | 0.05 | 0.01 | blup | 489 | 0.02 | 1.5e-03 | 7.8 | -8.8 | 2.1e-18 | -0.72 | 0.02 | 0.97 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | HTR4 | 0.06 | 0.03 | lasso | 4 | 0.03 | 4.3e-05 | 10.0 | 9.3 | 8.9e-21 | 0.79 | 0.01 | 0.98 | TRUE |
3 | GTEx | Cells Transformed fibroblasts | FBXO38 | 0.18 | 0.05 | enet | 35 | 0.10 | 1.1e-07 | 7.8 | -6.6 | 4.6e-11 | -0.60 | 0.62 | 0.35 | FALSE |
4 | ROSMAP | Brain Pre-frontal Cortex | SPINK9 | 0.08 | 0.07 | enet | 21 | 0.07 | 1.4e-09 | 7.2 | 6.8 | 7.5e-12 | 0.48 | 1.00 | 0.00 | FALSE |
5 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | FBXO38 | 0.04 | 0.04 | blup | 52 | 0.04 | 4.8e-03 | 7.8 | -9.0 | 2.0e-19 | -0.75 | 0.05 | 0.14 | FALSE |
6 | The Cancer Genome Atlas | Colon Adenocarcinoma | FBXO38 | 0.05 | 0.02 | lasso | 2 | 0.02 | 4.3e-02 | 7.2 | -9.4 | 4.5e-21 | -0.77 | 0.04 | 0.31 | TRUE |
7 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | FBXO38 | 0.02 | 0.03 | enet | 2 | 0.03 | 1.9e-04 | -7.1 | -8.3 | 1.0e-16 | -0.76 | 0.04 | 0.59 | FALSE |
8 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | FBXO38 | 0.03 | 0.01 | enet | 6 | 0.01 | 5.0e-02 | 8.1 | -6.8 | 1.3e-11 | -0.53 | 0.08 | 0.04 | FALSE |
9 | The Cancer Genome Atlas | Brain Lower Grade Glioma | FBXO38 | 0.11 | 0.02 | blup | 52 | 0.04 | 8.2e-06 | 7.9 | -5.8 | 4.8e-09 | -0.53 | 0.68 | 0.08 | FALSE |
10 | The Cancer Genome Atlas | Lung Adenocarcinoma | FBXO38 | 0.03 | 0.02 | blup | 51 | 0.02 | 7.7e-04 | 7.2 | -8.2 | 3.7e-16 | -0.63 | 0.54 | 0.08 | FALSE |
11 | The Cancer Genome Atlas | Prostate Adenocarcinoma | FBXO38 | 0.05 | 0.01 | blup | 51 | 0.02 | 7.9e-03 | -2.9 | -7.7 | 1.6e-14 | -0.66 | 0.05 | 0.17 | FALSE |
12 | The Cancer Genome Atlas | Rectum Adenocarcinoma | FBXO38 | 0.13 | 0.17 | enet | 16 | 0.15 | 2.3e-04 | 7.8 | -8.1 | 4.9e-16 | -0.65 | 0.12 | 0.31 | FALSE |
13 | The Cancer Genome Atlas | Thyroid Carcinoma | FBXO38 | 0.06 | 0.01 | enet | 7 | 0.01 | 3.2e-02 | -3.8 | -7.4 | 1.9e-13 | -0.59 | 0.04 | 0.26 | FALSE |