Best TWAS P=5.84e-09 · Best GWAS P=1.08e-08 conditioned to 0.105
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Cells EBV-transformed lymphocytes | NEXN | 0.23 | 0.10 | lasso | 3 | 0.08 | 1.4e-03 | -5.4 | -5.6 | 2.4e-08 | 0.85 | 0.02 | 0.88 | FALSE |
2 | GTEx | Lung | GIPC2 | 0.15 | 0.09 | enet | 17 | 0.12 | 2.5e-09 | -5.3 | 5.8 | 8.8e-09 | -0.85 | 0.03 | 0.97 | FALSE |
3 | GTEx | Nerve Tibial | DNAJB4 | 0.08 | 0.07 | lasso | 3 | 0.07 | 1.3e-05 | -5.5 | -5.4 | 5.7e-08 | 0.78 | 0.02 | 0.97 | FALSE |
4 | GTEx | Pancreas | GIPC2 | 0.41 | 0.13 | enet | 29 | 0.14 | 1.1e-06 | -5.2 | 5.4 | 6.0e-08 | -0.61 | 0.02 | 0.97 | FALSE |
5 | GTEx | Skin Sun Exposed Lower leg | DNAJB4 | 0.07 | 0.05 | lasso | 5 | 0.05 | 6.5e-05 | -5.5 | -5.7 | 1.4e-08 | 0.75 | 0.02 | 0.96 | FALSE |
6 | GTEx | Spleen | GIPC2 | 0.43 | 0.07 | enet | 19 | 0.22 | 2.9e-06 | -4.5 | 5.2 | 2.0e-07 | -0.73 | 0.07 | 0.92 | FALSE |
7 | ROSMAP | Brain Pre-frontal Cortex | DNAJB4 | 0.08 | 0.09 | lasso | 2 | 0.09 | 1.3e-11 | -5.3 | -5.3 | 1.2e-07 | 0.79 | 0.04 | 0.95 | FALSE |
8 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | DNAJB4 | 0.05 | 0.03 | lasso | 3 | 0.02 | 3.3e-03 | -5.2 | -5.7 | 8.9e-09 | 0.93 | 0.00 | 0.99 | FALSE |
9 | The Cancer Genome Atlas | Brain Lower Grade Glioma | DNAJB4 | 0.08 | 0.07 | lasso | 1 | 0.06 | 9.3e-08 | -5.2 | -5.2 | 1.7e-07 | 0.79 | 0.03 | 0.97 | FALSE |
10 | The Cancer Genome Atlas | Prostate Adenocarcinoma | GIPC2 | 0.10 | 0.11 | blup | 64 | 0.13 | 1.1e-13 | -5.7 | 5.8 | 5.8e-09 | -0.82 | 0.01 | 0.99 | TRUE |
11 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | DNAJB4 | 0.24 | 0.14 | lasso | 1 | 0.11 | 1.1e-04 | -5.2 | -5.2 | 1.7e-07 | 0.79 | 0.01 | 0.93 | FALSE |