Best TWAS P=4.69e-12 · Best GWAS P=1.71e-16 conditioned to 8.62e-11
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | RRP15 | 0.55 | 0.46 | enet | 22 | 0.52 | 9.0e-74 | 5.2 | 5.9 | 3.1e-09 | -0.04 | 1.00 | 0.00 | FALSE |
2 | GTEx | Adipose Subcutaneous | RRP15 | 0.24 | 0.14 | lasso | 2 | 0.12 | 3.2e-10 | 5.3 | 5.3 | 1.2e-07 | -0.06 | 1.00 | 0.00 | FALSE |
3 | GTEx | Adrenal Gland | RRP15 | 0.41 | 0.16 | enet | 30 | 0.12 | 5.6e-05 | 5.3 | 5.3 | 1.3e-07 | -0.04 | 0.85 | 0.01 | FALSE |
4 | GTEx | Artery Aorta | RRP15 | 0.23 | 0.17 | lasso | 3 | 0.15 | 8.3e-09 | 5.3 | 5.2 | 2.0e-07 | -0.08 | 1.00 | 0.00 | FALSE |
5 | GTEx | Artery Tibial | RRP15 | 0.19 | 0.16 | lasso | 4 | 0.14 | 8.7e-11 | 5.2 | 5.3 | 1.4e-07 | -0.06 | 1.00 | 0.00 | FALSE |
6 | GTEx | Brain Nucleus accumbens basal ganglia | RRP15 | 0.34 | 0.25 | lasso | 4 | 0.22 | 1.9e-06 | 5.2 | 5.8 | 5.3e-09 | -0.04 | 0.47 | 0.04 | FALSE |
7 | GTEx | Cells Transformed fibroblasts | RRP15 | 0.38 | 0.28 | lasso | 6 | 0.28 | 1.9e-21 | 5.2 | 5.3 | 1.3e-07 | -0.07 | 1.00 | 0.00 | FALSE |
8 | GTEx | Esophagus Mucosa | RRP15 | 0.38 | 0.29 | lasso | 6 | 0.31 | 3.3e-21 | 5.3 | 6.0 | 2.3e-09 | -0.06 | 1.00 | 0.00 | FALSE |
9 | GTEx | Lung | RRP15 | 0.11 | 0.13 | enet | 21 | 0.13 | 2.6e-10 | 5.2 | 5.6 | 1.9e-08 | -0.03 | 1.00 | 0.00 | FALSE |
10 | GTEx | Muscle Skeletal | RRP15 | 0.17 | 0.15 | lasso | 2 | 0.14 | 3.9e-14 | 5.2 | 5.4 | 6.6e-08 | -0.05 | 1.00 | 0.00 | FALSE |
11 | GTEx | Pituitary | RRP15 | 0.38 | 0.23 | lasso | 3 | 0.23 | 1.9e-06 | 5.3 | 6.1 | 9.6e-10 | -0.03 | 0.34 | 0.06 | FALSE |
12 | GTEx | Skin Sun Exposed Lower leg | RRP15 | 0.17 | 0.13 | lasso | 6 | 0.12 | 4.5e-10 | 5.3 | 5.3 | 1.1e-07 | -0.07 | 1.00 | 0.00 | FALSE |
13 | GTEx | Testis | RRP15 | 0.70 | 0.65 | lasso | 4 | 0.64 | 6.6e-36 | 5.2 | 5.4 | 8.0e-08 | -0.06 | 1.00 | 0.00 | FALSE |
14 | GTEx | Testis | ZC3H11B | 0.33 | 0.28 | lasso | 3 | 0.27 | 1.5e-12 | -5.5 | -5.5 | 3.3e-08 | 0.04 | 0.00 | 1.00 | TRUE |
15 | GTEx | Thyroid | RRP15 | 0.28 | 0.16 | lasso | 7 | 0.17 | 9.8e-13 | 5.3 | 5.9 | 3.4e-09 | -0.03 | 1.00 | 0.00 | FALSE |
16 | METSIM | Adipose | RRP15 | 0.28 | 0.24 | bslmm | 489 | 0.23 | 1.7e-34 | 5.3 | 5.7 | 1.1e-08 | 0.00 | 1.00 | 0.00 | FALSE |
17 | The Cancer Genome Atlas | Breast Invasive Carcinoma | RRP15 | 0.11 | 0.11 | lasso | 5 | 0.10 | 2.5e-20 | 5.2 | 5.2 | 2.3e-07 | -0.05 | 0.98 | 0.02 | FALSE |
18 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | RRP15 | 0.13 | 0.13 | lasso | 1 | 0.10 | 1.4e-05 | 5.3 | 5.3 | 1.3e-07 | -0.06 | 0.74 | 0.04 | FALSE |
19 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | RRP15 | 0.07 | 0.07 | lasso | 2 | 0.06 | 2.0e-07 | 6.9 | 6.9 | 4.7e-12 | -0.03 | 0.00 | 1.00 | TRUE |
20 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | RRP15 | 0.17 | 0.11 | enet | 9 | 0.12 | 7.4e-13 | 5.2 | 5.2 | 1.9e-07 | -0.03 | 0.98 | 0.02 | FALSE |
21 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | RRP15 | 0.14 | 0.04 | enet | 11 | 0.06 | 4.0e-04 | 5.2 | 5.2 | 1.7e-07 | -0.03 | 0.12 | 0.38 | FALSE |
22 | The Cancer Genome Atlas | Brain Lower Grade Glioma | RRP15 | 0.10 | 0.10 | lasso | 1 | 0.10 | 4.7e-11 | 5.2 | 5.2 | 1.7e-07 | -0.05 | 0.98 | 0.02 | FALSE |
23 | The Cancer Genome Atlas | Lung Adenocarcinoma | RRP15 | 0.09 | 0.09 | lasso | 3 | 0.09 | 3.2e-10 | 5.2 | 5.1 | 2.8e-07 | -0.06 | 0.98 | 0.02 | FALSE |
24 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | RRP15 | 0.10 | 0.09 | lasso | 3 | 0.08 | 9.8e-10 | 5.3 | 5.3 | 9.6e-08 | -0.06 | 0.98 | 0.02 | FALSE |
25 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | RRP15 | 0.15 | 0.12 | lasso | 2 | 0.12 | 1.9e-05 | 5.3 | 5.3 | 1.3e-07 | -0.06 | 0.16 | 0.14 | FALSE |
26 | The Cancer Genome Atlas | Prostate Adenocarcinoma | RRP15 | 0.29 | 0.29 | lasso | 2 | 0.29 | 2.7e-30 | 5.2 | 5.3 | 1.4e-07 | -0.06 | 0.98 | 0.02 | FALSE |
27 | The Cancer Genome Atlas | Soft Tissue Sarcoma | TGFB2 | 0.05 | 0.03 | blup | 73 | 0.03 | 4.5e-03 | 6.9 | -6.5 | 7.6e-11 | -0.90 | 0.01 | 0.88 | TRUE |
28 | The Cancer Genome Atlas | Stomach Adenocarcinoma | RRP15 | 0.11 | 0.09 | lasso | 3 | 0.07 | 8.2e-06 | 5.3 | 5.2 | 1.6e-07 | -0.06 | 0.24 | 0.71 | FALSE |
29 | The Cancer Genome Atlas | Thyroid Carcinoma | RRP15 | 0.22 | 0.25 | lasso | 3 | 0.24 | 1.7e-23 | 5.2 | 5.2 | 1.5e-07 | -0.06 | 0.98 | 0.02 | FALSE |
30 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | TGFB2 | 0.24 | 0.11 | enet | 10 | 0.14 | 1.4e-04 | 5.9 | -5.9 | 4.6e-09 | -0.80 | 0.08 | 0.63 | FALSE |