TWAS
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Traits
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Traits
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Forced vital capacity (FVC), Best measure
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chr3:48,702,606-50,448,632
Best TWAS P=3.32e-08 · Best GWAS P=6.01e-07 conditioned to 0.0116
48.6M
48.8M
49M
49.2M
49.4M
49.6M
49.8M
50M
50.2M
50.4M
0
1
2
3
4
5
6
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
GTEx
Brain Frontal Cortex BA9
GPX1
0.16
0.06
lasso
6
0.15
7.9e-05
-4.0
-5.5
3.3e-08
-0.62
0.05
0.75
TRUE
3
GTEx
Colon Transverse
RNF123
0.16
0.05
enet
36
0.05
2.3e-03
-3.8
-5.4
6.8e-08
-0.15
0.14
0.30
TRUE
5
GTEx
Lung
GPX1
0.04
0.02
enet
13
0.04
5.7e-04
4.6
-5.5
3.6e-08
-0.52
0.05
0.71
FALSE
1
GTEx
Brain Cerebellum
GPX1
0.31
0.09
enet
19
0.23
2.0e-07
4.8
-5.4
8.0e-08
-0.50
0.04
0.94
FALSE
4
GTEx
Lung
RNF123
0.13
0.05
enet
18
0.07
5.8e-06
-4.2
-5.2
2.0e-07
-0.32
0.18
0.72
FALSE
6
The Cancer Genome Atlas
Breast Invasive Carcinoma
AMIGO3
0.01
0.00
enet
13
0.01
5.7e-03
-3.8
-5.2
2.5e-07
-0.41
0.01
0.20
FALSE