TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Body mass index (BMI)
:
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chr13:30,336,006-31,886,850
Best TWAS P=2.51e-09 · Best GWAS P=1.22e-10 conditioned to 0.0139
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
GTEx
Breast Mammary Tissue
HMGB1
0.26
0.02
lasso
6
0.03
9.1e-03
-6.4
6.0
2.5e-09
-0.90
0.00
0.97
TRUE
3
The Cancer Genome Atlas
Kidney Renal Clear Cell Carcinoma
HMGB1
0.08
0.04
lasso
1
0.04
6.9e-05
-5.9
5.9
4.8e-09
-0.78
0.03
0.95
FALSE
2
GTEx
Muscle Skeletal
HMGB1
0.21
0.05
lasso
6
0.08
7.1e-08
-5.3
5.5
3.2e-08
-0.74
0.04
0.95
FALSE
4
The Cancer Genome Atlas
Prostate Adenocarcinoma
HMGB1
0.10
0.07
lasso
4
0.06
1.4e-06
-5.3
5.5
4.7e-08
-0.80
0.15
0.85
FALSE
5
The Cancer Genome Atlas
Thyroid Carcinoma
HMGB1
0.07
0.06
lasso
1
0.05
1.2e-05
-5.3
5.3
1.3e-07
-0.79
0.03
0.96
FALSE