TWAS
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Models
Genes
Traits
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Traits
:
Body mass index (BMI)
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chr13:27,300,215-28,717,392
Best TWAS P=5.7e-09 · Best GWAS P=3.03e-11 conditioned to 0.033
27.4M
27.6M
27.8M
28M
28.2M
28.4M
28.6M
28.8M
0
2
4
6
8
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
3
GTEx
Nerve Tibial
AL137059.1
0.10
0.02
lasso
3
0.03
2.9e-03
3.9
-5.8
5.7e-09
0.71
0.02
0.94
TRUE
5
The Cancer Genome Atlas
Brain Lower Grade Glioma
GTF3A
0.03
0.00
enet
8
0.01
2.3e-02
1.3
5.7
1.4e-08
-0.63
0.01
0.84
TRUE
2
GTEx
Muscle Skeletal
MTIF3
0.12
0.03
lasso
5
0.03
1.2e-03
-5.2
-5.4
6.5e-08
0.74
0.07
0.89
FALSE
4
YFS
Blood
MTIF3
0.07
0.05
enet
19
0.06
1.6e-18
-3.9
-5.2
2.6e-07
0.77
0.76
0.24
FALSE
1
CommonMind
Brain Pre-frontal Cortex
GTF3A
0.15
0.11
enet
26
0.13
4.1e-15
-3.9
5.1
2.7e-07
-0.74
0.09
0.91
FALSE