Best TWAS P=7.33e-11 · Best GWAS P=3.69e-08 conditioned to 0.0182
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | RGS6 | 0.07 | 0.02 | bslmm | 888 | 0.01 | 2.0e-02 | -1.5 | 5.7 | 1.6e-08 | -0.21 | 0.13 | 0.03 | TRUE |
2 | GTEx | Adipose Subcutaneous | DCAF4 | 0.20 | 0.05 | lasso | 7 | 0.18 | 1.1e-14 | 3.9 | 5.3 | 1.2e-07 | -0.66 | 0.09 | 0.90 | FALSE |
3 | GTEx | Adipose Visceral Omentum | DCAF4 | 0.23 | 0.07 | enet | 30 | 0.13 | 4.3e-07 | 3.7 | 5.7 | 1.5e-08 | -0.48 | 0.40 | 0.52 | FALSE |
4 | GTEx | Adipose Visceral Omentum | RP11-109N23.6 | 0.14 | 0.11 | enet | 15 | 0.13 | 2.2e-07 | -5.5 | 6.4 | 1.5e-10 | -0.81 | 0.01 | 0.99 | TRUE |
5 | GTEx | Breast Mammary Tissue | DCAF4 | 0.24 | 0.10 | lasso | 6 | 0.18 | 1.2e-09 | 3.9 | 5.8 | 5.9e-09 | -0.63 | 0.46 | 0.47 | FALSE |
6 | GTEx | Breast Mammary Tissue (Female) | RP11-109N23.6 | 0.18 | -0.01 | lasso | 7 | 0.00 | 3.9e-01 | -3.9 | 5.8 | 7.6e-09 | -0.67 | 0.05 | 0.56 | FALSE |
7 | GTEx | Colon Sigmoid | DCAF4 | 0.30 | 0.10 | lasso | 9 | 0.11 | 1.3e-04 | 4.4 | 5.4 | 6.3e-08 | -0.39 | 0.10 | 0.37 | FALSE |
8 | GTEx | Esophagus Gastroesophageal Junction | DCAF4 | 0.18 | 0.01 | enet | 10 | 0.06 | 3.0e-03 | 4.4 | 6.5 | 7.3e-11 | -0.46 | 0.08 | 0.42 | TRUE |
9 | GTEx | Esophagus Mucosa | DCAF4 | 0.30 | 0.19 | enet | 35 | 0.23 | 1.3e-15 | 4.4 | 5.7 | 8.9e-09 | -0.51 | 0.54 | 0.43 | FALSE |
10 | GTEx | Esophagus Mucosa | ZFYVE1 | 0.10 | 0.00 | lasso | 7 | 0.00 | 2.0e-01 | 4.4 | 6.2 | 4.8e-10 | -0.67 | 0.05 | 0.83 | FALSE |
11 | GTEx | Spleen | DCAF4 | 0.47 | 0.12 | enet | 10 | 0.19 | 1.5e-05 | 3.9 | 5.9 | 3.2e-09 | -0.55 | 0.20 | 0.70 | FALSE |
12 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | DCAF4 | 0.04 | 0.02 | blup | 83 | 0.03 | 1.2e-04 | 3.4 | 5.3 | 9.5e-08 | -0.64 | 0.19 | 0.59 | FALSE |
13 | The Cancer Genome Atlas | Thyroid Carcinoma | DPF3 | 0.10 | 0.02 | blup | 210 | 0.07 | 1.9e-07 | -4.2 | -5.5 | 3.7e-08 | 0.62 | 0.13 | 0.85 | FALSE |