Best TWAS P=9.74e-08 · Best GWAS P=8.05e-08 conditioned to 1
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Muscle Skeletal | GAPVD1 | 0.13 | 0.10 | lasso | 3 | 0.09 | 4.7e-09 | -5.4 | 5.3 | 9.7e-08 | -1.00 | 0.02 | 0.98 | TRUE |
| 2 | GTEx | Thyroid | GAPVD1 | 0.05 | 0.05 | enet | 13 | 0.01 | 6.6e-02 | -5.2 | -5.3 | 1.1e-07 | 0.99 | 0.02 | 0.98 | FALSE |
| 3 | The Cancer Genome Atlas | Prostate Adenocarcinoma | GAPVD1 | 0.02 | 0.04 | enet | 4 | 0.01 | 9.8e-03 | -5.2 | 5.1 | 2.8e-07 | -0.95 | 0.02 | 0.90 | FALSE |