Best TWAS P=1.1e-08 · Best GWAS P=1.16e-07 conditioned to 0.589
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | ADORA2B | 0.06 | 0.07 | blup | 304 | 0.07 | 5.0e-09 | -5.0 | -5.5 | 3.3e-08 | 0.92 | 0.06 | 0.93 | FALSE |
2 | GTEx | Artery Aorta | TTC19 | 0.06 | 0.00 | lasso | 3 | 0.00 | 7.1e-01 | -5.2 | 5.6 | 2.7e-08 | -0.87 | 0.06 | 0.44 | FALSE |
3 | GTEx | Artery Coronary | TTC19 | 0.19 | 0.07 | enet | 2 | 0.03 | 3.9e-02 | -5.2 | 5.2 | 1.6e-07 | -0.93 | 0.06 | 0.71 | FALSE |
4 | GTEx | Brain Cerebellum | ZSWIM7 | 0.25 | 0.13 | lasso | 4 | 0.12 | 2.6e-04 | -5.0 | 5.2 | 2.2e-07 | -0.99 | 0.06 | 0.93 | FALSE |
5 | GTEx | Pancreas | TTC19 | 0.12 | 0.09 | enet | 9 | 0.07 | 8.5e-04 | -4.8 | 5.2 | 2.6e-07 | -0.86 | 0.08 | 0.79 | FALSE |
6 | GTEx | Skin Not Sun Exposed Suprapubic | ADORA2B | 0.15 | 0.13 | lasso | 3 | 0.12 | 3.8e-07 | -5.3 | -5.3 | 1.3e-07 | 0.99 | 0.04 | 0.95 | FALSE |
7 | GTEx | Skin Sun Exposed Lower leg | TTC19 | 0.08 | 0.18 | lasso | 3 | 0.17 | 6.9e-14 | -5.2 | 5.2 | 2.2e-07 | -0.94 | 0.05 | 0.95 | FALSE |
8 | GTEx | Skin Sun Exposed Lower leg | ADORA2B | 0.12 | 0.17 | lasso | 4 | 0.17 | 3.1e-14 | -5.2 | -5.2 | 2.4e-07 | 0.99 | 0.04 | 0.95 | FALSE |
9 | GTEx | Spleen | ADORA2B | 0.23 | 0.27 | enet | 10 | 0.24 | 7.4e-07 | -5.3 | -5.5 | 5.0e-08 | 0.97 | 0.05 | 0.94 | FALSE |
10 | GTEx | Whole Blood | ADORA2B | 0.08 | 0.00 | lasso | 5 | 0.00 | 2.5e-01 | -4.7 | -5.5 | 3.2e-08 | 0.85 | 0.05 | 0.60 | FALSE |
11 | YFS | Blood | PIGL | 0.02 | 0.02 | blup | 279 | 0.02 | 1.5e-06 | -3.8 | -5.7 | 1.1e-08 | 0.88 | 0.24 | 0.76 | TRUE |
12 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | ADORA2B | 0.13 | 0.17 | blup | 37 | 0.16 | 8.2e-08 | -5.0 | -5.2 | 1.7e-07 | 0.96 | 0.02 | 0.98 | FALSE |
13 | The Cancer Genome Atlas | Lung Adenocarcinoma | ZSWIM7 | 0.05 | 0.05 | blup | 48 | 0.05 | 3.3e-06 | -4.4 | -5.1 | 3.1e-07 | 0.98 | 0.03 | 0.97 | FALSE |
14 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | TTC19 | 0.03 | 0.03 | enet | 8 | 0.03 | 2.0e-04 | -5.1 | 5.2 | 2.0e-07 | -0.97 | 0.04 | 0.95 | FALSE |
15 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | ADORA2B | 0.10 | 0.07 | enet | 9 | 0.08 | 5.0e-06 | -5.2 | -5.1 | 3.1e-07 | 0.94 | 0.01 | 0.98 | FALSE |
16 | The Cancer Genome Atlas | Thyroid Carcinoma | TTC19 | 0.16 | 0.21 | lasso | 5 | 0.20 | 1.4e-19 | -5.2 | 5.2 | 2.6e-07 | -0.92 | 0.03 | 0.97 | FALSE |