Best TWAS P=4.38e-08 · Best GWAS P=4.04e-08 conditioned to 0.00081
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Vagina | AC021860.1 | 0.42 | 0.04 | lasso | 12 | 0.07 | 1.2e-02 | 3.5 | 5.5 | 4.4e-08 | 0.46 | 0.05 | 0.22 | TRUE |
| 2 | GTEx | Vagina | RP11-617D20.1 | 0.31 | 0.01 | lasso | 8 | 0.02 | 1.4e-01 | 3.4 | 5.2 | 1.8e-07 | 0.79 | 0.03 | 0.46 | FALSE |
| 3 | GTEx | Whole Blood | RP11-617D20.1 | 0.14 | 0.06 | lasso | 3 | 0.05 | 4.2e-05 | -5.1 | 5.3 | 1.1e-07 | 0.84 | 0.00 | 0.99 | FALSE |