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chr2:108,372,251-110,002,052
Best TWAS P=2.88e-08 · Best GWAS P=2.41e-08 conditioned to 0.222
108.4M
108.6M
108.8M
109M
109.2M
109.4M
109.6M
109.8M
110M
0
2
4
6
8
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
CommonMind
Brain Pre-frontal Cortex
GCC2
0.12
0.17
enet
30
0.18
5.1e-21
5.5
5.5
2.9e-08
0.92
0.02
0.98
TRUE
2
GTEx
Brain Cerebellum
GCC2
0.17
0.10
enet
16
0.08
2.4e-03
4.9
5.3
9.3e-08
0.94
0.02
0.94
FALSE
3
GTEx
Esophagus Muscularis
LIMS1
0.10
0.00
lasso
3
0.00
2.4e-01
5.2
5.2
1.8e-07
0.88
0.03
0.90
FALSE
4
The Cancer Genome Atlas
Head and Neck Squamous Cell Carcinoma
LIMS1
0.02
0.01
blup
54
0.02
4.1e-03
-4.1
-5.2
1.8e-07
-0.88
0.03
0.79
FALSE