459 significantly associated models · 122 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 74957325 | 75479163 | 1 | 1 | 1.1e-07 | 4.9e-06 | 4.9e-01 | 98 | TYW3 |
2 | 1 | 117211384 | 118766534 | 1 | 1 | 7.9e-11 | 1.1e-09 | 7.8e-01 | 100 | MAN1A2 |
3 | 1 | 155424065 | 156838141 | 1 | 1 | 2.1e-07 | 3.8e-07 | 1.0e+00 | 100 | SEMA4A |
4 | 1 | 201164764 | 202607593 | 2 | 1 | 2.3e-10 | 1.9e-10 | 1.0e+00 | 100 | LMOD1 |
5 | 1 | 242590540 | 244345666 | 3 | 1 | 5.8e-11 | 1.8e-09 | 1.2e-01 | 93 | SDCCAG8 |
6 | 2 | 64586858 | 66006558 | 1 | 1 | 6.7e-08 | 1.3e-06 | 3.8e-01 | 97 | CEP68 |
7 | 2 | 108372251 | 110002052 | 2 | 1 | 2.9e-08 | 2.4e-08 | 2.2e-01 | 95 | GCC2 |
8 | 2 | 197745121 | 200117777 | 3 | 1 | 1.3e-09 | 1.4e-09 | 1.0e+00 | 100 | MARS2 |
9 | 2 | 207107801 | 208531683 | 1 | 1 | 1.8e-08 | 3.8e-08 | 1.0e+00 | 100 | CPO |
10 | 3 | 48381826 | 51077419 | 27 | 1 | 3.5e-17 | 1.7e-14 | 5.5e-01 | 99 | RNF123 |
11 | 3 | 70757099 | 71880670 | 1 | 1 | 2.5e-07 | 1.8e-07 | 1.0e+00 | 100 | FOXP1 |
12 | 3 | 135861666 | 137253713 | 1 | 1 | 2.4e-07 | 2.5e-06 | 1.6e-01 | 91 | RP11-731C17.2 |
13 | 4 | 1785025 | 3943984 | 9 | 7 | 3.3e-14 | 3.3e-13 | 1.0e+00 | 100 | C4orf10 GRK4 RNF4 |
14 | 4 | 89947254 | 91439574 | 1 | 1 | 1.4e-07 | 5.1e-08 | 2.1e-02 | 82 | SNCA |
15 | 4 | 158997448 | 160525502 | 1 | 1 | 3.7e-08 | 3.7e-09 | 1.0e+00 | 100 | FNIP2 |
16 | 6 | 33857525 | 35542476 | 2 | 1 | 4.4e-08 | 1.9e-08 | 1.7e-01 | 94 | C6orf106 |
17 | 7 | 1161158 | 2972072 | 1 | 1 | 2.8e-10 | 8.4e-12 | 4.5e-05 | 64 | MAD1L1 |
18 | 8 | 8165004 | 10985432 | 3 | 2 | 7.7e-09 | 3.5e-10 | 2.6e-03 | 77 | MSRA RP11-375N15.2 |
19 | 8 | 11276542 | 13120332 | 1 | 1 | 2.2e-07 | 1.2e-08 | 4.4e-03 | 75 | LOC100506990 |
20 | 8 | 29996824 | 31433801 | 1 | 1 | 8.1e-12 | 7.2e-12 | 4.0e-03 | 82 | TEX15 |
21 | 8 | 142629143 | 144179460 | 1 | 1 | 1.7e-10 | 1.1e-06 | 3.1e-01 | 96 | TSNARE1 |
22 | 9 | 13891813 | 15288045 | 1 | 1 | 1.7e-07 | 2.0e-07 | 6.5e-02 | 87 | RP11-408A13.4 |
23 | 9 | 95502571 | 96898436 | 2 | 2 | 1.7e-07 | 3.6e-08 | 3.5e-03 | 72 | PHF2 RP11-165J3.6 |
24 | 9 | 126927285 | 129422783 | 6 | 8 | 1.4e-12 | 1.2e-12 | 1.0e+00 | 100 | GOLGA1 PBX3 WDR38 |
25 | 10 | 98926838 | 100488720 | 1 | 1 | 1.7e-08 | 4.9e-07 | 6.9e-02 | 87 | CRTAC1 |
26 | 11 | 64501991 | 67059499 | 13 | 2 | 1.1e-10 | 1.0e-07 | 3.7e-02 | 85 | CTD-3074O7.5 SNX32 |
27 | 11 | 76827992 | 78216992 | 1 | 1 | 9.7e-08 | 3.3e-06 | 4.6e-01 | 97 | AP000580.1 |
28 | 11 | 112486568 | 113952419 | 3 | 1 | 7.0e-10 | 5.6e-09 | 2.3e-01 | 96 | ANKK1 |
29 | 12 | 55746910 | 57125879 | 1 | 1 | 2.8e-07 | 7.8e-06 | 2.6e-02 | 75 | RPS26 |
30 | 13 | 31078511 | 32595740 | 1 | 1 | 3.1e-08 | 2.6e-08 | 2.3e-01 | 95 | B3GALTL |
31 | 14 | 69027866 | 70518587 | 3 | 1 | 5.1e-09 | 3.4e-09 | 5.2e-02 | 89 | DCAF5 |
32 | 15 | 73524629 | 74968873 | 2 | 2 | 1.9e-08 | 3.8e-06 | 3.6e-02 | 80 | LOXL1-AS1 STOML1 |
33 | 16 | 24614505 | 25167985 | 1 | 1 | 2.4e-07 | 2.7e-10 | 7.3e-05 | 61 | SLC5A11 |
34 | 16 | 29972690 | 31833122 | 9 | 1 | 3.5e-10 | 7.9e-11 | 2.5e-02 | 88 | KAT8 |
35 | 16 | 52772129 | 54210447 | 1 | 1 | 1.4e-07 | 2.7e-07 | 1.3e-07 | -5 | RBL2 |
36 | 16 | 71070698 | 72569466 | 3 | 1 | 3.0e-08 | 8.7e-08 | 5.5e-01 | 99 | PHLPP2 |
37 | 17 | 1594359 | 2985816 | 1 | 1 | 1.2e-07 | 2.5e-07 | 5.4e-01 | 99 | RP1-59D14.1 |
38 | 17 | 42892795 | 43383100 | 1 | 1 | 1.1e-07 | 1.5e-07 | 3.3e-02 | 84 | NMT1 |
39 | 17 | 47119135 | 47685050 | 1 | 1 | 1.0e-08 | 3.5e-10 | 1.0e-02 | 83 | ZNF652 |
40 | 17 | 65289798 | 66844411 | 4 | 1 | 7.6e-09 | 7.7e-09 | 5.1e-02 | 89 | LINC00674 |
41 | 19 | 1226004 | 2732986 | 2 | 1 | 2.0e-08 | 3.6e-09 | 1.3e-02 | 82 | BTBD2 |
42 | 19 | 18359524 | 19753882 | 1 | 1 | 2.9e-07 | 1.1e-05 | 9.1e-06 | -2 | AC005932.1 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Brain Cortex | 5 | 0.483 | 2.4 |
GTEx | Cells EBV-transformed lymphocytes | 5 | 0.351 | 2.4 |
GTEx | Esophagus Gastroesophageal Junction | 9 | 0.623 | 2.4 |
GTEx | Prostate | 4 | 0.479 | 2.4 |
GTEx | Skin Not Sun Exposed Suprapubic | 11 | 0.447 | 2.4 |
GTEx | Small Intestine Terminal Ileum | 2 | 0.434 | 2.4 |
GTEx | Spleen | 8 | 0.567 | 2.4 |
The Cancer Genome Atlas | Esophageal Carcinoma | 2 | 0.292 | 2.4 |
GTEx | Brain Cerebellum | 9 | 0.454 | 2.3 |
GTEx | Brain Frontal Cortex BA9 | 4 | 0.433 | 2.3 |
GTEx | Breast Mammary Tissue | 6 | 0.304 | 2.3 |
GTEx | Colon Sigmoid | 7 | 0.479 | 2.3 |
GTEx | Esophagus Muscularis | 17 | 0.526 | 2.3 |
GTEx | Heart Atrial Appendage | 7 | 0.443 | 2.3 |
GTEx | Lung | 10 | 0.348 | 2.3 |
GTEx | Ovary | 3 | 0.330 | 2.3 |
GTEx | Skin Sun Exposed Lower leg | 10 | 0.275 | 2.3 |
GTEx | Stomach | 4 | 0.275 | 2.3 |
GTEx | Vagina | 2 | 0.315 | 2.3 |
GTEx | Adipose Subcutaneous | 12 | 0.344 | 2.2 |
GTEx | Adipose Visceral Omentum | 5 | 0.246 | 2.2 |
GTEx | Artery Aorta | 7 | 0.235 | 2.2 |
GTEx | Artery Coronary | 4 | 0.338 | 2.2 |
GTEx | Artery Tibial | 8 | 0.213 | 2.2 |
GTEx | Brain Caudate basal ganglia | 2 | 0.217 | 2.2 |
GTEx | Breast Mammary Tissue (Female) | 6 | 0.365 | 2.2 |
GTEx | Cells Transformed fibroblasts | 15 | 0.357 | 2.2 |
GTEx | Colon Transverse | 5 | 0.242 | 2.2 |
GTEx | Esophagus Mucosa | 9 | 0.271 | 2.2 |
GTEx | Muscle Skeletal | 3 | 0.104 | 2.2 |
GTEx | Nerve Tibial | 9 | 0.208 | 2.2 |
GTEx | Pituitary | 3 | 0.269 | 2.2 |
GTEx | Testis | 5 | 0.158 | 2.2 |
GTEx | Thyroid | 16 | 0.400 | 2.2 |
GTEx | Uterus | 3 | 0.529 | 2.2 |
GTEx | Whole Blood | 10 | 0.502 | 2.2 |
ROSMAP | Brain Pre-frontal Cortex | 15 | 0.342 | 2.2 |
CommonMind | Brain Pre-frontal Cortex | 12 | 0.223 | 2.2 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 4 | 0.242 | 2.2 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 11 | 0.404 | 2.2 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 8 | 0.482 | 2.2 |
GTEx | Adrenal Gland | 4 | 0.275 | 2.1 |
GTEx | Brain Cerebellar Hemisphere | 6 | 0.403 | 2.1 |
GTEx | Brain Putamen basal ganglia | 1 | 0.160 | 2.1 |
GTEx | Heart Left Ventricle | 4 | 0.261 | 2.1 |
GTEx | Liver | 3 | 0.418 | 2.1 |
GTEx | Pancreas | 3 | 0.184 | 2.1 |
NTR | Blood | 5 | 0.208 | 2.1 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 5 | 0.456 | 2.1 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 3 | 0.294 | 2.1 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 14 | 0.342 | 2.1 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 16 | 0.372 | 2.1 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 8 | 0.272 | 2.1 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 4 | 0.251 | 2.1 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 3 | 0.226 | 2.1 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 5 | 0.391 | 2.1 |
The Cancer Genome Atlas | Thyroid Carcinoma | 14 | 0.271 | 2.1 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 1 | 0.197 | 2.1 |
GTEx | Brain Nucleus accumbens basal ganglia | 3 | 0.347 | 2.0 |
GTEx | Breast Mammary Tissue (Male) | 1 | 0.084 | 2.0 |
METSIM | Adipose | 6 | 0.130 | 2.0 |
YFS | Blood | 5 | 0.108 | 2.0 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 8 | 0.182 | 2.0 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 2 | 0.097 | 2.0 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 6 | 0.293 | 2.0 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 4 | 0.160 | 2.0 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 14 | 0.303 | 2.0 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 3 | 0.434 | 2.0 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 3 | 0.281 | 2.0 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 0 | 0.000 | 2.0 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 4 | 0.238 | 2.0 |
GTEx | Brain Hippocampus | 0 | 0.000 | 1.9 |
GTEx | Brain Hypothalamus | 1 | 0.169 | 1.9 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 3 | 0.271 | 1.9 |