TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Whole body fat mass
:
←
→
chr7:43,821,453-45,498,400
Best TWAS P=9.26e-12 · Best GWAS P=6.74e-12 conditioned to 0.0277
43.8M
44M
44.2M
44.4M
44.6M
44.8M
45M
45.2M
45.4M
0
2
4
6
8
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
3
The Cancer Genome Atlas
Brain Lower Grade Glioma
PPIA
0.05
0.02
enet
5
0.03
7.7e-05
-6.9
-6.8
9.3e-12
0.82
0.00
0.95
TRUE
2
GTEx
Cells Transformed fibroblasts
ZMIZ2
0.12
0.09
lasso
4
0.06
2.3e-05
-5.4
-5.4
5.7e-08
0.68
0.03
0.96
FALSE
1
GTEx
Brain Hypothalamus
AC004453.8
0.54
0.13
lasso
7
0.16
1.8e-04
-2.0
-5.2
2.4e-07
0.55
0.04
0.34
FALSE