Best TWAS P=1e-10 · Best GWAS P=1.27e-12 conditioned to 1.36e-05
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Lung | NFATC3 | 0.04 | 0.01 | lasso | 4 | 0.01 | 4.1e-02 | 5.8 | -6.1 | 1.0e-09 | -0.32 | 0.28 | 0.12 | FALSE |
| 2 | GTEx | Thyroid | PLA2G15 | 0.06 | 0.04 | enet | 5 | 0.04 | 5.7e-04 | 6.2 | 6.2 | 7.3e-10 | 0.38 | 0.46 | 0.40 | TRUE |
| 3 | The Cancer Genome Atlas | Colon Adenocarcinoma | NFATC3 | 0.22 | 0.05 | lasso | 3 | 0.06 | 3.6e-04 | 3.4 | -5.6 | 2.1e-08 | -0.35 | 0.01 | 0.98 | FALSE |
| 4 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | NFATC3 | 0.11 | 0.04 | enet | 4 | 0.04 | 2.8e-05 | 6.3 | -6.1 | 1.1e-09 | -0.36 | 0.00 | 0.99 | FALSE |
| 5 | The Cancer Genome Atlas | Brain Lower Grade Glioma | NFATC3 | 0.23 | 0.05 | lasso | 2 | 0.06 | 8.5e-08 | 6.3 | -5.5 | 3.4e-08 | -0.31 | 0.00 | 1.00 | FALSE |
| 6 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | AGRP | 0.11 | 0.01 | enet | 6 | 0.07 | 2.5e-05 | 5.7 | -6.5 | 1.0e-10 | -0.12 | 0.00 | 0.77 | TRUE |
| 7 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | NFATC3 | 0.46 | 0.16 | lasso | 4 | 0.20 | 1.7e-07 | -3.3 | -5.3 | 1.4e-07 | -0.33 | 0.01 | 0.98 | FALSE |
| 8 | The Cancer Genome Atlas | Thyroid Carcinoma | C16orf48 | 0.04 | 0.02 | blup | 17 | 0.04 | 8.5e-05 | -2.0 | 5.3 | 1.2e-07 | 0.37 | 0.01 | 0.49 | FALSE |