TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Impedance of whole body
:
←
→
chr7:89,097,580-90,553,586
Best TWAS P=7.4e-08 · Best GWAS P=6.81e-08 conditioned to 0.091
89.2M
89.4M
89.6M
89.8M
90M
90.2M
90.4M
90.6M
0
2
4
6
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
The Cancer Genome Atlas
Cervical Squamous Cell Carcinoma
GTPBP10
0.08
0.01
blup
61
0.03
7.8e-03
-5.4
5.4
7.4e-08
-0.83
0.00
0.96
TRUE
3
The Cancer Genome Atlas
Thyroid Carcinoma
GTPBP10
0.08
0.10
lasso
4
0.10
1.0e-09
-4.6
5.3
1.3e-07
-0.86
0.01
0.98
FALSE
1
GTEx
Brain Caudate basal ganglia
STEAP2
0.30
0.08
lasso
4
0.15
4.1e-05
-3.9
5.3
1.4e-07
-0.84
0.02
0.91
FALSE