TWAS
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Usage
Models
Genes
Traits
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Traits
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Impedance of whole body
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chr1:36,314,199-36,888,520
Best TWAS P=1.07e-08 · Best GWAS P=1.18e-09 conditioned to 0.00298
36.3M
36.4M
36.5M
36.6M
36.7M
36.8M
36.9M
0
2
4
6
8
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
3
The Cancer Genome Atlas
Colon Adenocarcinoma
TRAPPC3
0.07
0.02
blup
38
0.03
0.00567
5.0
5.7
1.1e-08
0.69
0.05
0.38
TRUE
4
The Cancer Genome Atlas
Thyroid Carcinoma
COL8A2
0.04
0.03
blup
30
0.03
0.00026
5.2
-5.4
5.8e-08
-0.54
0.02
0.92
FALSE
2
The Cancer Genome Atlas
Colon Adenocarcinoma
MAP7D1
0.06
0.01
blup
33
0.04
0.00131
5.0
5.2
2.5e-07
0.75
0.02
0.44
FALSE
1
The Cancer Genome Atlas
Breast Invasive Carcinoma
TEKT2
0.01
0.02
lasso
1
0.02
0.00024
5.1
5.2
2.7e-07
0.33
0.01
0.96
FALSE