TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Impedance of leg (right)
:
←
→
chr8:140,840,550-142,706,843
Best TWAS P=8.12e-10 · Best GWAS P=4.4e-10 conditioned to 1
141M
141.5M
142M
142.5M
0
2
4
6
8
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
ROSMAP
Brain Pre-frontal Cortex
PTK2
0.05
0.07
lasso
4
0.07
5.4e-09
-6.15
6.1
8.1e-10
-0.98
0.04
0.96
TRUE
5
YFS
Blood
PTK2
0.02
0.00
blup
538
0.01
8.6e-04
-5.93
6.1
9.2e-10
-0.70
0.05
0.56
FALSE
2
GTEx
Liver
CASC7
0.12
0.11
enet
8
0.01
1.4e-01
-6.04
-6.0
2.3e-09
1.00
0.06
0.78
FALSE
1
GTEx
Brain Caudate basal ganglia
PTK2
0.28
0.01
lasso
4
0.09
1.5e-03
-4.93
6.0
2.4e-09
-0.59
0.11
0.53
FALSE
3
GTEx
Skin Not Sun Exposed Suprapubic
PTK2
0.20
-0.01
enet
34
0.01
7.2e-02
0.83
-5.4
5.9e-08
0.45
0.11
0.39
FALSE