Best TWAS P=1.75e-09 · Best GWAS P=2.61e-08 conditioned to 0.894
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Artery Aorta | NUCKS1 | 0.14 | 0.11 | lasso | 3 | 0.08 | 3.7e-05 | 4.9 | -5.4 | 6.3e-08 | -0.92 | 0.01 | 0.98 | FALSE |
2 | GTEx | Brain Cerebellum | SLC41A1 | 0.27 | 0.09 | lasso | 4 | 0.08 | 2.1e-03 | 5.6 | 5.3 | 1.4e-07 | 0.94 | 0.01 | 0.91 | FALSE |
3 | GTEx | Esophagus Mucosa | NUCKS1 | 0.12 | 0.11 | enet | 6 | 0.06 | 7.2e-05 | -5.2 | -5.7 | 1.5e-08 | -0.77 | 0.02 | 0.98 | FALSE |
4 | GTEx | Esophagus Muscularis | NUCKS1 | 0.21 | 0.22 | lasso | 5 | 0.20 | 3.6e-12 | 5.6 | -5.7 | 1.1e-08 | -0.98 | 0.00 | 1.00 | FALSE |
5 | GTEx | Heart Atrial Appendage | NUCKS1 | 0.12 | 0.14 | enet | 4 | 0.08 | 1.7e-04 | -5.2 | -5.6 | 2.7e-08 | -0.80 | 0.01 | 0.97 | FALSE |
6 | GTEx | Nerve Tibial | NUCKS1 | 0.25 | 0.21 | enet | 16 | 0.22 | 7.3e-16 | 5.5 | -5.2 | 1.6e-07 | -0.95 | 0.01 | 0.99 | FALSE |
7 | GTEx | Nerve Tibial | RAB7L1 | 0.35 | 0.14 | enet | 68 | 0.22 | 1.8e-15 | -4.4 | 5.5 | 4.1e-08 | 0.58 | 0.14 | 0.86 | FALSE |
8 | GTEx | Nerve Tibial | SLC41A1 | 0.12 | 0.02 | lasso | 4 | 0.05 | 2.5e-04 | 4.9 | 5.5 | 3.0e-08 | 0.81 | 0.02 | 0.98 | FALSE |
9 | GTEx | Pancreas | NUCKS1 | 0.16 | 0.00 | lasso | 4 | 0.00 | 4.5e-01 | -5.1 | -5.7 | 1.3e-08 | -0.85 | 0.02 | 0.84 | FALSE |
10 | GTEx | Pituitary | NUCKS1 | 0.26 | 0.19 | lasso | 2 | 0.20 | 7.6e-06 | 5.6 | -5.7 | 1.2e-08 | -1.00 | 0.00 | 0.98 | FALSE |
11 | GTEx | Skin Not Sun Exposed Suprapubic | NUCKS1 | 0.20 | 0.14 | lasso | 4 | 0.13 | 2.0e-07 | 5.1 | -5.3 | 9.3e-08 | -0.98 | 0.01 | 0.99 | FALSE |
12 | GTEx | Skin Sun Exposed Lower leg | NUCKS1 | 0.20 | 0.26 | lasso | 5 | 0.26 | 1.5e-21 | 5.1 | -5.1 | 3.1e-07 | -0.95 | 0.01 | 0.98 | FALSE |
13 | GTEx | Stomach | NUCKS1 | 0.21 | 0.11 | lasso | 8 | 0.15 | 1.1e-07 | 5.6 | -6.0 | 1.7e-09 | -0.92 | 0.01 | 0.99 | TRUE |
14 | GTEx | Testis | NUCKS1 | 0.16 | 0.16 | enet | 15 | 0.16 | 1.3e-07 | 5.3 | -5.7 | 1.1e-08 | -0.89 | 0.01 | 0.99 | FALSE |
15 | GTEx | Thyroid | NUCKS1 | 0.26 | 0.16 | lasso | 6 | 0.19 | 1.8e-14 | 5.3 | -5.6 | 1.9e-08 | -0.92 | 0.01 | 0.99 | FALSE |
16 | METSIM | Adipose | NUCKS1 | 0.05 | 0.02 | lasso | 6 | 0.01 | 4.3e-03 | 5.3 | -5.7 | 1.5e-08 | -0.88 | 0.01 | 0.98 | FALSE |
17 | YFS | Blood | NUCKS1 | 0.15 | 0.24 | lasso | 4 | 0.25 | 1.4e-80 | 5.1 | -5.5 | 4.8e-08 | -0.92 | 0.02 | 0.98 | FALSE |
18 | YFS | Blood | RAB7L1 | 0.06 | 0.07 | lasso | 6 | 0.06 | 1.1e-19 | -5.1 | 5.5 | 4.2e-08 | 0.79 | 0.03 | 0.97 | FALSE |
19 | YFS | Blood | SLC41A1 | 0.06 | 0.05 | enet | 15 | 0.05 | 2.6e-17 | 5.1 | 5.1 | 2.8e-07 | 0.90 | 0.01 | 0.99 | FALSE |
20 | The Cancer Genome Atlas | Breast Invasive Carcinoma | RAB7L1 | 0.02 | 0.02 | enet | 5 | 0.02 | 3.1e-04 | -4.5 | 5.2 | 2.3e-07 | 0.60 | 0.06 | 0.88 | FALSE |
21 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | RAB7L1 | 0.09 | 0.13 | lasso | 6 | 0.13 | 3.6e-14 | -4.7 | 5.3 | 9.6e-08 | 0.73 | 0.10 | 0.90 | FALSE |
22 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | RAB7L1 | 0.09 | 0.08 | enet | 11 | 0.08 | 1.7e-09 | -5.1 | 5.3 | 1.0e-07 | 0.74 | 0.02 | 0.98 | FALSE |
23 | The Cancer Genome Atlas | Brain Lower Grade Glioma | RAB7L1 | 0.09 | 0.08 | lasso | 2 | 0.07 | 1.1e-08 | -5.1 | 5.1 | 2.8e-07 | 0.71 | 0.02 | 0.98 | FALSE |
24 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | RAB7L1 | 0.06 | 0.05 | enet | 6 | 0.06 | 2.6e-07 | -4.5 | 5.1 | 3.0e-07 | 0.66 | 0.18 | 0.79 | FALSE |
25 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | RAB7L1 | 0.06 | 0.06 | blup | 46 | 0.06 | 5.2e-05 | 4.9 | 5.5 | 4.7e-08 | 0.88 | 0.01 | 0.99 | FALSE |
26 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | RAB7L1 | 0.09 | 0.04 | blup | 46 | 0.04 | 1.2e-02 | -5.1 | 5.6 | 2.6e-08 | 0.80 | 0.01 | 0.91 | FALSE |
27 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | RAB7L1 | 0.17 | 0.13 | lasso | 2 | 0.11 | 4.4e-05 | -5.2 | 5.2 | 2.4e-07 | 0.70 | 0.01 | 0.94 | FALSE |
28 | The Cancer Genome Atlas | Prostate Adenocarcinoma | NUCKS1 | 0.04 | 0.05 | lasso | 2 | 0.03 | 1.5e-04 | 4.9 | -5.2 | 1.8e-07 | -0.92 | 0.01 | 0.98 | FALSE |
29 | The Cancer Genome Atlas | Prostate Adenocarcinoma | RAB7L1 | 0.12 | 0.12 | lasso | 2 | 0.12 | 3.8e-12 | -5.2 | 5.3 | 9.2e-08 | 0.69 | 0.01 | 0.99 | FALSE |
30 | The Cancer Genome Atlas | Stomach Adenocarcinoma | RAB7L1 | 0.07 | 0.04 | blup | 46 | 0.07 | 1.2e-05 | 5.1 | 5.1 | 2.9e-07 | 0.74 | 0.02 | 0.96 | FALSE |
31 | The Cancer Genome Atlas | Thyroid Carcinoma | RAB7L1 | 0.13 | 0.17 | enet | 15 | 0.21 | 3.6e-20 | -5.2 | 5.5 | 4.5e-08 | 0.83 | 0.01 | 0.99 | FALSE |
32 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | NUCKS1 | 0.11 | 0.02 | blup | 58 | 0.09 | 1.9e-03 | -4.4 | -5.4 | 5.2e-08 | -0.77 | 0.02 | 0.60 | FALSE |